PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018955.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 679aa    MW: 75543.2 Da    PI: 6.4167
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018955.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.4e-23116216198
                  EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  f+k+lt sd++++g +++ +k+a+e+     +++ + +++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +++el+
  CCG018955.1 116 FCKILTASDTSTHGGFSVLRKHATEClppldMSQATPTQELAARDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGDNGELR 211
                  99****************************9555566679************************************************..3489999* PP

                  EEEE- CS
           B3  94 vkvfr 98 
                  v+v+r
  CCG018955.1 212 VGVRR 216
                  ***98 PP
2Auxin_resp94.22.2e-31242321183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha+ t++ F v+Y+Pr+   ++++ ++k+++a+k+ +svGmRfkm+fe+eds+err++Gt+vgv d++p +W++S WrsLk
  CCG018955.1 242 ASHAVLTQTLFVVYYKPRT--NQYIIGLNKYLEAVKNGFSVGMRFKMRFEGEDSPERRFTGTIVGVGDISP-EWSGSIWRSLK 321
                  68999*************6..99**********************************************99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.37E-41107245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-39110231IPR015300DNA-binding pseudobarrel domain
CDDcd100178.48E-20114216No hitNo description
PfamPF023623.6E-21116216IPR003340B3 DNA binding domain
PROSITE profilePS5086311.815116218IPR003340B3 DNA binding domain
SMARTSM010197.5E-22116218IPR003340B3 DNA binding domain
PfamPF065071.2E-29242321IPR010525Auxin response factor
PfamPF023094.7E-10558647IPR033389AUX/IAA domain
SuperFamilySSF542774.32E-12565646No hitNo description
PROSITE profilePS5174526.929570651IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MAHAERGCDD LYTELWKACA GPLVDVPKDG ERVFYFPQGH MEQLEASTNQ ELNQQIPRFN  60
LPPKILCRVV NIQLLAEQDT DEVYAQITLH PEADQTEPTS PDPCPPEPAK RTIHSFCKIL  120
TASDTSTHGG FSVLRKHATE CLPPLDMSQA TPTQELAARD LHGFEWRFKH IFRGQPRRHL  180
LTTGWSTFVT SKRLVAGDAF VFLRGDNGEL RVGVRRLARQ QSSIPSSVIS SQSMHLGVLA  240
TASHAVLTQT LFVVYYKPRT NQYIIGLNKY LEAVKNGFSV GMRFKMRFEG EDSPERRFTG  300
TIVGVGDISP EWSGSIWRSL KIQWDEPATI QRPERVSPWD IEPFAAPASP NLTQQVMKTK  360
RPRPTDIPTS AASSFWYHGP AQSHELAQLG SSIEVQSSES HVWSMRQKEI DSNLLNSSSS  420
CNTRARPEGI WPSPHMNGSL NFFPDSVGDN NFATTQSIIS GFSSPISSRQ SNCLINEQVE  480
KGRKYENSVG CRLFGIDLTS NSSSSAPPEK EPGYPIVDSN GTKGLGPAAS EAERAQTMDV  540
SMYLKEQNQV LSEAMLKESQ SKQGSTTSMR TRTKVQMQGI AVGRALDLTV LKGYTDLINE  600
LEKMFEIEGE LSTPKKWAVV FTDDEGDMML VGDDPWPEFC KMVKKIFLKK TGTRCKLPAS  660
PFEGEETVVS KDSEHTSDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-175934417355Auxin response factor 1
4ldw_A1e-175934417355Auxin response factor 1
4ldw_B1e-175934417355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359363KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT1646980.0KT164698.1 Populus tomentosa clone Potom.002G07206 auxin response factor 11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023162.10.0PREDICTED: auxin response factor 18 isoform X2
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLA0A172CDD90.0A0A172CDD9_POPTO; Auxin response factor
STRINGPOPTR_0002s17350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]