PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG018920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 491aa MW: 54664.6 Da PI: 5.2696 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.2 | 2.6e-12 | 317 | 362 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L CCG018920.1 317 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 362 799***********************6.....4***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.4E-53 | 25 | 209 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.238 | 313 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.8E-18 | 314 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.31E-14 | 316 | 366 | No hit | No description |
Pfam | PF00010 | 7.2E-10 | 317 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-16 | 317 | 378 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-16 | 319 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MDELIISPSS SSSPVSLSQE TPPTLQQRLQ FMVQNQPDWW SYAIFWQTSN DDSGRIFLGW 60 GDGHFQGSKD TSPKLNTFSN SRVTISNSER KRVMMKGIQS LVGECHDLDM SLMDGNDATD 120 SEWFYVMSLT RSFSPGDGIL GKAYTTGSLI WLTGGHELQF YNCERVKEAQ MHGIETLVCI 180 PTSCGVLELG SSSVIRENWG LVQQAKSLFG SDLSAYLVPK GPNNSSEEPT PFLDRSISFA 240 DMGIIAGLQE DCAVDREQKN AHETEEANKR NANKPGLPYL NSEPSDSDFP LLAMHMEKRI 300 PKKRGRKPGL GRDAPLNHVE AERQRREKLN HRFYALRAVV PNVSRMDKAS LLSDAVSYIN 360 ELKAKVDELE SQLEREFKKV KLEVADNLDN QSTTTSVDQS ACRPNSAGGA GHALEVEVKF 420 VGNDAMIRVQ SENVNYPASR LMCALRELEF QVHHASMSCV NELMLQDVVV RVPDGLRTEE 480 ALKSALLGRL E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 7e-33 | 19 | 209 | 3 | 192 | Transcription factor MYC3 |
4rqw_B | 7e-33 | 19 | 209 | 3 | 192 | Transcription factor MYC3 |
4rs9_A | 7e-33 | 19 | 209 | 3 | 192 | Transcription factor MYC3 |
4yz6_A | 7e-33 | 19 | 209 | 3 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146939 | 0.0 | EF146939.1 Populus trichocarpa clone WS01225_C18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011023113.1 | 0.0 | PREDICTED: transcription factor MYC2-like | ||||
TrEMBL | B9GR68 | 0.0 | B9GR68_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s17750.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 5e-89 | bHLH family protein |