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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG018621.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 370aa MW: 43391.4 Da PI: 8.4228 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.8 | 1.1e-06 | 68 | 89 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cg sF+ + +L +H+++H CCG018621.1 68 TCEKCGASFKKPAYLIQHMQSH 89 6*******************99 PP | |||||||
2 | zf-C2H2 | 14.4 | 0.00011 | 95 | 119 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 +kC dC+ s++rk++L+rH+ H CCG018621.1 95 FKCLfdDCHASYRRKDHLTRHLLQH 119 899999***************9887 PP | |||||||
3 | zf-C2H2 | 22.1 | 3.9e-07 | 124 | 149 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ +C++ F +snLkrHir H CCG018621.1 124 FRCQieNCNREFVYPSNLKRHIRElH 149 89*********************988 PP | |||||||
4 | zf-C2H2 | 18.5 | 5.4e-06 | 164 | 188 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ Cgk F+ +s L++H +H CCG018621.1 164 YACQepGCGKAFRYPSKLRKHEDSH 188 789999***************9888 PP | |||||||
5 | zf-C2H2 | 14.7 | 8.9e-05 | 256 | 280 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C +Fs+k nL++H + H CCG018621.1 256 KCHfkGCQHTFSTKTNLNQHVKAvH 280 7*******************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.871 | 23 | 50 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 24 | 23 | 45 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.4E-7 | 67 | 89 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 13.048 | 67 | 94 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0073 | 67 | 89 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 69 | 89 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.62E-10 | 75 | 127 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.6E-12 | 90 | 121 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.39 | 95 | 124 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.044 | 95 | 119 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 97 | 119 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.1E-6 | 122 | 146 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.09E-6 | 122 | 150 | No hit | No description |
PROSITE profile | PS50157 | 12.736 | 124 | 154 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0015 | 124 | 149 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 126 | 149 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.2E-10 | 160 | 188 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.48E-6 | 160 | 188 | No hit | No description |
SMART | SM00355 | 0.004 | 164 | 188 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.531 | 164 | 193 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 166 | 188 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.8 | 196 | 221 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 198 | 221 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 18 | 224 | 245 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 6.1E-6 | 237 | 292 | No hit | No description |
PROSITE profile | PS50157 | 11.572 | 255 | 285 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0018 | 255 | 280 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.4E-4 | 256 | 283 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 257 | 280 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 13 | 286 | 312 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 288 | 312 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MAMMEEEQEE KERPVIFRDI RRYYCDYCGI CRSKKSLITS HVLTHHKEEM DEESVDGDEG 60 KEGVKSNTCE KCGASFKKPA YLIQHMQSHS LERPFKCLFD DCHASYRRKD HLTRHLLQHE 120 GKLFRCQIEN CNREFVYPSN LKRHIRELHD ESSPSSSFGG EKQYACQEPG CGKAFRYPSK 180 LRKHEDSHVS LDHVEAMCLE PGCMKHFSNK ECLKAHIQSS HQYINCDICG TKQLKKNIKR 240 HLRTHEPASD SIERIKCHFK GCQHTFSTKT NLNQHVKAVH LEHRPFLCGF PGCDMRFAYK 300 HVRDNHEKSG LHVYTPGDFV ESDRQFRSKP RGGRKRKFPT VEMLIRKRVT PPTKLDECHP 360 LLHEIEREDQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 3e-15 | 63 | 245 | 18 | 184 | Aart |
2i13_B | 3e-15 | 63 | 245 | 18 | 184 | Aart |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011001093.1 | 0.0 | PREDICTED: zinc finger protein 37-like | ||||
Swissprot | Q84MZ4 | 1e-142 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | U5FVV9 | 0.0 | U5FVV9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s11300.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3069 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 1e-143 | transcription factor IIIA |