PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG018612.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 224aa MW: 24082 Da PI: 9.4669 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.9 | 1.3e-06 | 194 | 217 | 6 | 29 |
HHHHHHHHHHHHHHHHHHHCTSCC CS HLH 6 nerErrRRdriNsafeeLrellPk 29 +++Er RR ri +++ +L+el+P+ CCG018612.1 194 SIAERVRRTRISDRIRKLQELVPN 217 689********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.362 | 188 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.8E-6 | 191 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.58E-4 | 192 | 222 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.1E-5 | 193 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MHQAPAASGN TSGGGGGGGG GGGLPRLRSA PATWLLALLE EEEEDPLKQN QNLTQLLTSN 60 APSSRNSAPF NASSAAVEPG LFETGGVFRR QNSSPADFIG NSGIGSDQGY FSNYGISSNY 120 EYMPPNMEVS PSGKRAREIE LRNPSARYPP PLKGAQTGPL RASSLIEMEM DKLLEESVPC 180 KIRAKRGCAT HPRSIAERVR RTRISDRIRK LQELVPNMDK VTPF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011001080.1 | 1e-160 | PREDICTED: transcription factor bHLH80-like isoform X1 | ||||
Swissprot | Q9C8P8 | 1e-62 | BH080_ARATH; Transcription factor bHLH80 | ||||
TrEMBL | A0A2K1Y413 | 1e-124 | A0A2K1Y413_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s10900.1 | 1e-117 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9132 | 30 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35460.1 | 7e-48 | bHLH family protein |