PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018394.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HB-other
Protein Properties Length: 322aa    MW: 36575.9 Da    PI: 6.1939
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018394.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.49.8e-082723052154
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  k +yps+e++++L +++gL+ +q+ +WF N+R +
  CCG018394.1 272 KWPYPSEEDKARLVQETGLQLKQINNWFINQRKR 305
                  469*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.4E-1761105IPR005540KNOX1
PfamPF037903.3E-1763104IPR005540KNOX1
SMARTSM012561.8E-25114169IPR005541KNOX2
PfamPF037912.6E-18118168IPR005541KNOX2
PROSITE profilePS512139.167226246IPR005539ELK domain
PROSITE profilePS5007111.596246309IPR001356Homeobox domain
SMARTSM003891.4E-10248313IPR001356Homeobox domain
SuperFamilySSF466895.13E-16248310IPR009057Homeodomain-like
CDDcd000864.75E-11249308No hitNo description
Gene3DG3DSA:1.10.10.601.2E-24253309IPR009057Homeodomain-like
PfamPF059207.6E-18266305IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAFQLQHHHL SASSSTGPPW LSNAVLRRNG DFITIEKPEN TTNNGSEEEL VDSVSDNWER  60
AKCKAEILGH PLYEQLLSAH VACLRIATPV DQLARIDTQL AQSQDVLAKY SGVGRSHVVD  120
EKELDQFMTH YALLLCSFKD QLQQHVRVHA MEAVMACWEL EQSLQSLTGV SPGEGTGATM  180
SDDEDDQAES DTNFNDGNLD GLDAMGFGPL VPTETERSLM ERVRQELKHE FKQDYKEKIV  240
DIREEILRKR RAGKLPGDTT SHLKAWWQTH SKWPYPSEED KARLVQETGL QLKQINNWFI  300
NQRKRNWHSS PSGSTSKSKR KK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302321RKRNWHSSPSGSTSKSKRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7699990.0KP769999.1 Populus tomentosa Homeobox protein knotted-1-like 3 (Potri.006G190000) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017948.10.0PREDICTED: homeobox protein knotted-1-like LET12
SwissprotP480001e-161KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLB9IMJ90.0B9IMJ9_POPTR; Uncharacterized protein
STRINGPOPTR_0018s12200.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-158KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]