PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG018317.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 229aa MW: 26166.3 Da PI: 7.5027 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.3 | 1.1e-15 | 12 | 59 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W +eEd++l+ +v+ +G g+W+t++++ g+ R +k+c++rw +yl CCG018317.1 12 KGLWKPEEDLILKTYVETHGEGNWSTVSKKSGLMRGGKSCRLRWKNYL 59 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.3 | 2.7e-16 | 65 | 110 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE++ +++ +k+lG++ W++Ia +++ gRt++++k++w+++l CCG018317.1 65 RGGMSQEEEDMIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 110 6779******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 5 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.873 | 7 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-28 | 9 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-12 | 11 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-14 | 12 | 59 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.42E-10 | 15 | 59 | No hit | No description |
PROSITE profile | PS51294 | 24.747 | 60 | 114 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-24 | 63 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-16 | 64 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 65 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.76E-11 | 68 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MESKEAKPKV KKGLWKPEED LILKTYVETH GEGNWSTVSK KSGLMRGGKS CRLRWKNYLR 60 PNIKRGGMSQ EEEDMIIRMH KLLGNRWSLI AGRLPGRTDN EVKNYWNTHL NKRLPSGKRK 120 GTDSNPDQDD NNTKENKSKR LRALGDSQPT GNTSPIGSTE ELEGKDQEKE ERSAVSDLWA 180 QDAQSMMNYY IESPMVPDNN GTFVFDDEPF LAYWDSFVLF ESVGCGGDW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-24 | 8 | 114 | 23 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011017815.1 | 1e-170 | PREDICTED: transcription factor MYB82-like | ||||
Swissprot | Q9LTF7 | 8e-66 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | B9IMW0 | 1e-164 | B9IMW0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s12780.1 | 1e-164 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13545 | 20 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 3e-66 | myb domain protein 82 |