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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG018299.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | YABBY | ||||||||
Protein Properties | Length: 188aa MW: 21216 Da PI: 8.0843 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 205.5 | 2e-63 | 9 | 161 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklse 103 eq+Cy+ CnfCn +lavsvP + l+ vvtvrCGhCt+llsvn+a a q l+ ++h++ +++ ++ + + + ++ ++ st ++++++ CCG018299.1 9 PHEQLCYIPCNFCNIVLAVSVPCSNLYDVVTVRCGHCTNLLSVNMAAAFQSLSWQDHVQ--ASNHISHDYRIDMGSSSKF---INKISTRTPATNI-- 99 579*****************************************************944..4456666655543332222...2222333333222.. PP YABBY 104 nedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++e v+rPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+i fgl CCG018299.1 100 ATQE-----RVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPHIQFGL 161 2222.....2479****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.9E-70 | 9 | 161 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 7.33E-8 | 104 | 155 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.8E-4 | 109 | 155 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MSSCVDVVPH EQLCYIPCNF CNIVLAVSVP CSNLYDVVTV RCGHCTNLLS VNMAAAFQSL 60 SWQDHVQASN HISHDYRIDM GSSSKFINKI STRTPATNIA TQERVVNRPP EKRQRVPSAY 120 NQFIKEEIQR IKANNPEISH REAFSTAAKN WAHFPHIQFG LMLETSNQTK LDDGSDKHLM 180 SRSTLLNN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ667743 | 3e-57 | KJ667743.1 Solanum melongena YAB5 protein mRNA, complete cds. | |||
GenBank | KJ667745 | 3e-57 | KJ667745.1 Solanum aethiopicum YAB5 protein mRNA, complete cds. | |||
GenBank | KJ667747 | 3e-57 | KJ667747.1 Solanum torvum YAB5 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011017779.1 | 1e-141 | PREDICTED: axial regulator YABBY 5-like | ||||
Swissprot | Q8GW46 | 7e-81 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | B9IMX9 | 1e-133 | B9IMX9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s12990.1 | 1e-134 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 3e-83 | YABBY family protein |
Publications ? help Back to Top | |||
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