PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG018237.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 28066.7 Da PI: 5.0245 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48 | 2.3e-15 | 54 | 99 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + Er+RR+++N+++ eLr+ +Pk + Kl+Ka+i + A++YI++Lq CCG018237.1 54 NTVSERNRRKKLNDKLLELRQAVPKiS------KLDKASIIKDAIDYIQDLQ 99 5678*********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.999 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.1E-17 | 51 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.38E-12 | 52 | 102 | No hit | No description |
Pfam | PF00010 | 9.4E-13 | 54 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-17 | 55 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-15 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.788 | 170 | 244 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MESFEDISEY QKYWEMTSMF LNDELKSWAM DQASSQYYDS SSPDEAASAV ASKNTVSERN 60 RRKKLNDKLL ELRQAVPKIS KLDKASIIKD AIDYIQDLQE QETRLQAEIM ELESERSEKD 120 KGYEFERELP VLSTSKKTRY DHISDHREPR SDPIEVHQLR VSSMGEKTLF VSLTCSQARE 180 AMVKICEVFE SLKLKIITAS VTSVSGIVKQ TILIEADVEE RDHLKSRIER AIKALSGPYN 240 PQSM |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF144513 | 0.0 | EF144513.1 Populus trichocarpa clone PX0019_O05 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011017676.1 | 1e-179 | PREDICTED: transcription factor bHLH35-like | ||||
Swissprot | Q2HIV9 | 8e-68 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | B9IN64 | 1e-171 | B9IN64_POPTR; BHLH family protein | ||||
STRING | POPTR_0018s13830.1 | 1e-164 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3389 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 5e-64 | bHLH family protein |