PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG018235.1

Common Name

LOC105120938

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 241aa MW: 28315.2 Da PI: 5.2543

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG018235.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00047	57	94	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er RR+++ +++ Lre l+Ka++ + A++YI++Lq CCG018235.1 57 VSERSRRQKLSDKLLALREA-----------LDKASVIKDAIKYIQDLQ 94 56999999999999999975...........56779**********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.37E-11	41	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.25E-6	53	98	No hit	No description
SMART	SM00353	1.2E-5	56	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-7	65	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MEIIDNHYEY QNYWETNRFW NEDLDYSWEM NQQFNVGYYD SSSPDGNTQT IASKNIVSER 60 SRRQKLSDKL LALREALDKA SVIKDAIKYI QDLQEQERRL QADIRELESR RLEKNHTHDI 120 EDELPVLLRS KRTRYDQIYD HWLARSACPI QVHELSVTSM GEKTLFVSLT CSKTTDAMIR 180 ICEAFEPLML KIITANITTL SGMVKKTVLI EVDEEEKEQL KIKIERAVLA LRSAYNPMMS 240 I

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ363186	0.0	KJ363186.1 Populus euphratica bHLH35 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001291248.1	1e-176	transcription factor bHLH35-like
Swissprot	Q2HIV9	9e-66	BH035_ARATH; Transcription factor bHLH35
TrEMBL	A0A075TDQ2	1e-175	A0A075TDQ2_POPEU; BHLH35 protein
STRING	POPTR_0018s13850.1	1e-149	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3389	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.1	2e-60	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	105120938

Publications ? help Back to Top
Dong Y, et al. A novel bHLH transcription factor PebHLH35 from Populus euphratica confers drought tolerance through regulating stomatal development, photosynthesis and growth in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 450(1): p. 453-8 [PMID:24909687]