PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018207.3
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 1113aa    MW: 123170 Da    PI: 6.6628
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018207.3genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23130231199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F+  ++++++l
  CCG018207.3 130 FCKTLTASDTSTHGGFSVPRRAAEKTfppldfSMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFM--RDEKQHL 224
                  99*********************999*****9445444.38************************************************..5689999 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++++r+
  CCG018207.3 225 LLGIRRA 231
                  ****997 PP
2Auxin_resp115.93.5e-38256339183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr +Gt++g+sdld vrW+nS+Wr+L+
  CCG018207.3 256 AAHAAANNSPFTVYYNPRASPSEFVIPLAKYYKAVYsNQISLGMRFRMMFETEESGTRRHMGTITGISDLDAVRWKNSQWRNLQ 339
                  79********************************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.62E-43119259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-41121245IPR015300DNA-binding pseudobarrel domain
CDDcd100171.73E-19129230No hitNo description
SMARTSM010191.5E-22130232IPR003340B3 DNA binding domain
PfamPF023621.5E-21130231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.111130232IPR003340B3 DNA binding domain
PfamPF065076.1E-34256339IPR010525Auxin response factor
PfamPF023091.5E-79981086IPR033389AUX/IAA domain
PROSITE profilePS5174527.96610011085IPR000270PB1 domain
SuperFamilySSF542778.53E-710141079No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1113 aa     Download sequence    Send to blast
MKSPANGAAA AVTNGEGVEK KSINPELWQA CAGPLVNLPA AGTHVVYFPQ GHSEQVAASL  60
KKDVNAQIPN YPNLPSKLLC LLHNVTLHAD PETDEVYVQM TLQPVSSFDE DALLRSDLAL  120
KSNKPQTEFF CKTLTASDTS THGGFSVPRR AAEKTFPPLD FSMQPPAQEL VARDLHDNVW  180
TFRHIYRGQP KRHLLTTGWS LFVSGKRLLA GDSVLFMRDE KQHLLLGIRR ANRQPTNLSS  240
SVLSSDSMHI GILAAAAHAA ANNSPFTVYY NPRASPSEFV IPLAKYYKAV YSNQISLGMR  300
FRMMFETEES GTRRHMGTIT GISDLDAVRW KNSQWRNLQV GWDESTAGER RNRVSIWEIE  360
PVTAPFYICP PPFFRPKHPR QPGMPDDDST DLDSLFKRTM PWLGDDIYMK DPRVLPGLSL  420
AQRMNMQQNP SLANSIQPNY MQSLSGSVLQ NLPGGDLSRQ LGLSSPQMPQ PNNLQFNAQR  480
LPQQAQQLDQ LPKLQSLLNP LGSIIQSQQQ MGEITQQSRQ NMMAQTLPSS QVQAQLLQPQ  540
TLAHTNNILQ QQPCIQGHQL LRNLPQTLHQ QQQNQQQHIM GQNQQQSLMQ SQLSDQVNQH  600
MQMSDNQIQS QLMQKLQQQQ QSVSAQQSAM QQSGQLGQLQ DSQRQLLDAS QSFSRSMTPG  660
QMLEIPQTTP TSLPQPNTIP QQMTKNNNQT NTQFSHLPQQ LKPQQQHSGI MLLSEMAGHM  720
GHPPSSMANQ LSTAGSGILT AAAGPGQSGI TDDVPSCSTS PSTNNCPNMV QPMINGWAHR  780
STAMGEDMAQ SAVTLFSPCA LETVSSNGNL VKDLLQKSEV KPSLNISKNQ NPGLFSSQTY  840
LNGVAAQIDY LDTSSSTTSV CLSQNDVHLQ QNNNSLSYNP QSVLLRDASH DGELQGDPRN  900
NILYGTNIDS QLVMPMNSDH LLTKGMMGPG KDFSNNLSSG GMLTNCENSK DPQQELSSAI  960
VSKSFGVPDM PFNSIDSTIN DSSLLNRGSW APPQQQFQRM RTYTKVYKRG AVGRSIDITR  1020
YSGYDELKQD LARRFGIEGQ LEDQQRIGWK LVYTDHENDV LLVGDDPWEE FVNCVRCIKI  1080
LSPQEVQQMS LDGDFGNSVL PNQAGSSSDN VNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1671736045388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017617.10.0PREDICTED: auxin response factor 19-like
TrEMBLB9N8470.0B9N847_POPTR; Auxin response factor
STRINGPOPTR_0018s14300.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19