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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
CCG018043.1 |
Common Name | SCL7 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
GRAS |
Protein Properties |
Length: 588aa MW: 64886.1 Da PI: 4.8206 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
CCG018043.1 | genome | LZU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 356.6 | 3.8e-109 | 223 | 588 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
++L+ecA+ v+s + +a + L +l+e +s++gdp +R+ +yf+++L +r+a el + + +t+ s+e + ++k++++++P+ kf+hltaNq
CCG018043.1 223 KALVECAQLVES-KVDQAVKSLIKLKESVSENGDPGERVGFYFVQGLCRRVAV--GELDDLKNFHQTT---SEEFTLSYKALNDACPYSKFAHLTANQ 314
79********99.56677778889****************************8..4444444555554...999************************ PP
GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
aIlea+e+++++Hi+Df+i +G+QW+aLlqaLa+R++g+p ++Ri g+ +p g + +l +tg+rL +fA+ l+++fef++ + + +++l+ + +r
CCG018043.1 315 AILEATEKASKIHIVDFGIVHGVQWAALLQALATRSAGKPvRIRISGIPAPVLGknPAASLLATGNRLLDFAKLLDLNFEFEP-ILTPIQELNESCFR 411
************************************88777*********9988889999***********************.799*********** PP
GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
v+p+E+laVn++lql++ll e+ + + Lk+ ksl+P++v++ e e+++n+ +l+rf +al+yy+a+f+sl+ +++r+s+er vEr llgr+
CCG018043.1 412 VEPDEVLAVNFMLQLYNLLGETPGAVE---TALKMAKSLNPRIVTLGEYEVSLNRVGYLTRFKNALRYYTAVFESLDPNMSRDSQERLQVERLLLGRR 506
*******************77666666...9******************************************************************* PP
GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
i+ v+ g rrer+e +e+Wr +e++GF++v+ls++a++qak ll +++ s y++++++ ++ l W++ pL++vS+Wr
CCG018043.1 507 ISGVLGPDGI-RRERMEDKEQWRVLMESSGFESVSLSHYAMSQAKILLWNYNySTLYSLDDSQPGFLtLAWNEVPLLTVSSWR 588
*********9.59***************************************9999****99877777**************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 588 aa
Download sequence Send
to blast |
MAYMCADSGN LMAIAQQVIK QKQQQEQQQQ QSHHPQQQFL GLNPFSLNPW PSTTMSANPN 60 LGYGLSGPAA FSDPFQSGPD TGDPPGFSFS NMEHQHSSGF RFPDFTGAGG EFDSDEWMDS 120 LMNGGDSTDS SNLPSGCDAW QNNADFGIYP SDPFNTSPSR LTVGCSPPSD LNRVISNSLW 180 ADPSPQEIKP KTSPPQQPPP TAKNEVVVGS KEVVELSSSP VLKALVECAQ LVESKVDQAV 240 KSLIKLKESV SENGDPGERV GFYFVQGLCR RVAVGELDDL KNFHQTTSEE FTLSYKALND 300 ACPYSKFAHL TANQAILEAT EKASKIHIVD FGIVHGVQWA ALLQALATRS AGKPVRIRIS 360 GIPAPVLGKN PAASLLATGN RLLDFAKLLD LNFEFEPILT PIQELNESCF RVEPDEVLAV 420 NFMLQLYNLL GETPGAVETA LKMAKSLNPR IVTLGEYEVS LNRVGYLTRF KNALRYYTAV 480 FESLDPNMSR DSQERLQVER LLLGRRISGV LGPDGIRRER MEDKEQWRVL MESSGFESVS 540 LSHYAMSQAK ILLWNYNYST LYSLDDSQPG FLTLAWNEVP LLTVSSWR
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ511863 | 0.0 | KJ511863.1 Populus euphratica GRAS/SCL transcription factor (SCL7) mRNA, complete cds. |