PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017998.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 596aa    MW: 65356.8 Da    PI: 9.5578
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017998.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.11.1e-16291340255
                  HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r +h++ E+rRR++iN++f+ Lrel+P      ++K +Ka+ L +++eYI+ Lq
  CCG017998.1 291 RSKHSATEQRRRSKINDRFQMLRELIPRG----DQKKDKASFLLEVIEYIQFLQ 340
                  889*************************7....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.7E-26286363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-19287359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.583289339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-14291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.98E-15291344No hitNo description
SMARTSM003537.1E-13295345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MELPQQRPFG TEGSKPKHDL LSLYRHSSTV QQDPRPPCQG GYLKTHDFLQ PLERGGKTTA  60
KEITNVEVLT VEKPPPPAPP PAVEHILPGG IGTYSISQIS YFNQRVPKPE NTIFLVAQDS  120
STDKNDDNSN CSSYSGSGFT LWEESVLKKG KTGKENVGER SNIIRVSVSQ GKTRSNERNQ  180
PKLVSFDGFS LWNEAALKMG EWTTSERPSQ SSSNNHRNSF NSISTSQLAG RRSTQSFIEM  240
IKSAKGCTLD DDVDDEEEFL LKKETPSPIR KGELRVKVDG KSNDQKPDTP RSKHSATEQR  300
RRSKINDRFQ MLRELIPRGD QKKDKASFLL EVIEYIQFLQ EKVQKYEASY QGWNHETTKL  360
VPWKNNSRPV ESSADQSRGL NSGAGPALLF AAKLDERNIT ISPSINPGGA RNPVESDMTS  420
ANAMDRHPGF TNKSLPFPIS LQPNFNPGRT AGAAAQFPPR LPSDAENLAS QTQPQSCHAR  480
SWSTDEAVAS DKLKEKDLTV EGGTISISNA YSQGLVNTLT LALQSSGVDL SRASISVQIE  540
LGKTGNSGQT ASTSITKDNN VLPSNKGTTR SRVSGGEESV QELKKLKTSK ASARVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1453750.0EF145375.1 Populus trichocarpa clone WS01123_N13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002237.10.0PREDICTED: transcription factor BIM1-like isoform X1
RefseqXP_011002238.10.0PREDICTED: transcription factor BIM1-like isoform X1
RefseqXP_011002239.10.0PREDICTED: transcription factor BIM1-like isoform X1
TrEMBLA0A2K1Y9U30.0A0A2K1Y9U3_POPTR; BHLH family protein
STRINGPOPTR_0012s06650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-106bHLH family protein