PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG017901.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 274aa MW: 30329 Da PI: 9.7922

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG017901.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	68.4	1e-21	17	58	7	48
RWP-RK 7 ledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 e +sk+Fslp+ dAA++Lgvc++vLK+iCR++G++RWP+Rk CCG017901.1 17 WEAISKHFSLPLSDAANNLGVCVSVLKKICRENGLDRWPYRK 58 689**************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.073	1	81	IPR003035	RWP-RK domain
Pfam	PF02042	2.0E-20	17	58	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MNIQQQQQSN QSKPPSWEAI SKHFSLPLSD AANNLGVCVS VLKKICRENG LDRWPYRKYL 60 AGKSIEDIRR YAAREKIKAI ADLAKAANKS GIQQQNNENS KPHKLQQQGT KDVLVGRQHI 120 TLTSGLAKGL MGLDEFKYGF PSDGLSTATN KWWGSSLSDT QRATDRAGTE TDEDDGHQSE 180 EKADAGTSVV IVDEEKGENG KMESNEIDPQ GTGLLTSVRK RAVEEGREAL KLGVYRAYGV 240 NKLGRKQRAL LLRIFGSSLP KQWIQDFSSN RVGL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF148594	0.0	EF148594.1 Populus trichocarpa x Populus deltoides clone WS0134_I13 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011026245.1	0.0	PREDICTED: uncharacterized protein LOC105126913
TrEMBL	A9PJK4	0.0	A9PJK4_9ROSI; Uncharacterized protein
STRING	POPTR_0002s05980.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13122	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38340.1	1e-10	Nin-like family protein