PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017886.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 301aa    MW: 34647 Da    PI: 7.5302
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017886.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.51.6e-50211491128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 
                  + pGfrFhPtdeelv +yL++kve+k+l++ e ik++diyk++PwdLpk  +a+++ewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+++s    
  CCG017886.1  21 MLPGFRFHPTDEELVGFYLRRKVEKKPLRF-ELIKQIDIYKYDPWDLPKVSNAGDREWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSVkeP 117
                  579*************************99.99***************8888999**************************************98545 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  +e +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  CCG017886.1 118 HECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 149
                  566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-5518175IPR003441NAC domain
PROSITE profilePS5100553.71521176IPR003441NAC domain
PfamPF023653.2E-2523149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEALSKMSSS DIDHNEDEEL MLPGFRFHPT DEELVGFYLR RKVEKKPLRF ELIKQIDIYK  60
YDPWDLPKVS NAGDREWYFF CIRGRKYRNS IRPNRVTGSG FWKATGIDKP IYSVKEPHEC  120
IGLKKSLVYY RGSAGKGTKT DWMMHEFRLP PNGKTTNPKN IAQEAEVWTL CRILKRVPSY  180
KKYVPAAAAA AKQHPINDSN SKTCSFESET SAEQNVSFGD SVVQRNGRKP VIIDQVNHER  240
NHFFTGGQYD SITDAPFTAA FQNFWNPDVG DDFFDNGNWD ELRTVVELGA IDAAQVYDYC  300
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-472318219171NO APICAL MERISTEM PROTEIN
1ut4_B8e-472318219171NO APICAL MERISTEM PROTEIN
1ut7_A8e-472318219171NO APICAL MERISTEM PROTEIN
1ut7_B8e-472318219171NO APICAL MERISTEM PROTEIN
4dul_A8e-472318219171NAC domain-containing protein 19
4dul_B8e-472318219171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4504376e-69AM450437.2 Vitis vinifera contig VV78X104935.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026224.10.0PREDICTED: transcription factor JUNGBRUNNEN 1 isoform X1
SwissprotQ9SK551e-99NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A3N7EHA80.0A0A3N7EHA8_POPTR; Uncharacterized protein
STRINGPOPTR_0002s05820.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-101NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]