PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG017869.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 522aa MW: 57248.8 Da PI: 6.5664 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.5 | 3.1e-05 | 338 | 359 | 34 | 55 |
TTS-STCHHHHHHHHHHHHHHH CS HLH 34 pskKlsKaeiLekAveYIksLq 55 s++ +Ka++L +A+eY+ksLq CCG017869.1 338 LSERTDKASMLDEAIEYLKSLQ 359 57899****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-6 | 335 | 370 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.0E-5 | 338 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.21E-4 | 339 | 363 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 522 aa Download sequence Send to blast |
MNHCIPDWNL EGDLPVSNQK NPIEPDKELV ELLWRNGQVV LHSQTQRKPH PHVQKHDSPT 60 VRGYDSTLNS SHLIQDDETV SWIHDPLEDS FEKEFCSDFF SELPPPLSDQ ISEEKSAKFD 120 ASKTSHQQQQ LNNNKHPVVP EFPGNPMPPP RIQVQEQNHV SLGGFGKAVN VNFSQFSAPL 180 KVGDFRSSSR QFGGQGSGDF SQGEAREFSV VTVGSSNQTP RDRFLSRASG NAIETGTGLS 240 AGPSIDDPRK VISQSERGKA DQTLDPTATS SSGGSGSSLA RTCKQSAVPS RGQKRKTMDA 300 EESECQSEDA ELDSAVANKP AKRSGSARRS RAAEVHNLSE RTDKASMLDE AIEYLKSLQL 360 QLQVMWMGSG IVPVMFPGVQ HFMSRMGMGM GPPPLPSMQN PMHLPRVPLV DQSISMAPRQ 420 DRAVNCQTPV LNPVNYQDQM QNRTFSDQYA RFMGFHMQAA SQPMNMFQFG SQTVQQDQMM 480 APPNSGGGPL SAGTAASDAP PSGKTGKPFY SLHLPWKNNF SC |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP689415 | 1e-31 | KP689415.1 Prunus pseudocerasus isolate Unigene5738 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011026200.1 | 0.0 | PREDICTED: transcription factor PIF4 | ||||
Refseq | XP_011026201.1 | 0.0 | PREDICTED: transcription factor PIF4 | ||||
Refseq | XP_011026202.1 | 0.0 | PREDICTED: transcription factor PIF4 | ||||
Refseq | XP_011026203.1 | 0.0 | PREDICTED: transcription factor PIF4 | ||||
TrEMBL | B9GSQ9 | 0.0 | B9GSQ9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s05630.2 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8146 | 29 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43010.2 | 2e-27 | phytochrome interacting factor 4 |