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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG017765.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 98aa MW: 11105.8 Da PI: 12.3471 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 21.9 | 4.4e-07 | 29 | 53 | 2 | 25 |
AP2 2 gykGVrwdkkrgrWvAeIrd.pse.n 25 +++GVr ++ +gr++Ae rd +++ + CCG017765.1 29 HFRGVRKRP-WGRFAAETRDpWKKtR 53 69*******.**********886643 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-8 | 28 | 57 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-5 | 29 | 57 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 9.559 | 29 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MAVTTTLSLA GSSAPSSLAV QAKNEPQRHF RGVRKRPWGR FAAETRDPWK KTRRRLDTCL 60 RRGSSISPWA KGKDKLLPQR SFCSRAIFAN CGGWRRSF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028745.1 | 3e-19 | PREDICTED: ethylene-responsive transcription factor 1-like | ||||
TrEMBL | B9H8I3 | 6e-16 | B9H8I3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s24110.1 | 9e-17 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 2e-11 | ERF domain protein 12 |