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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG017736.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 143aa MW: 16106.6 Da PI: 6.6883 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.2e-19 | 22 | 72 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+G+r+++ +g+++AeIrdp++ng r +lg+++taeeAa+a+++a+ +++g+ CCG017736.1 22 YRGIRRRP-WGKFAAEIRDPTKNG--GRRWLGTYDTAEEAARAYDRAAFAFRGH 72 9*******.***********9998..888**********************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.5E-30 | 21 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-23 | 21 | 80 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.289 | 21 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-35 | 21 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.45E-29 | 22 | 80 | No hit | No description |
PRINTS | PR00367 | 2.9E-10 | 22 | 33 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-12 | 22 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
METHQGEKNT KKQEKGRGEN AYRGIRRRPW GKFAAEIRDP TKNGGRRWLG TYDTAEEAAR 60 AYDRAAFAFR GHLAILNFPN EYQHQDPSSA MSFASSSSFS TANPVNDGHE VSSTGGQEVI 120 EFEYLDNKLL EELLGTNDPS RQH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-29 | 16 | 129 | 5 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 10 | 28 | KKQEKGRGENAYRGIRRRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011025996.1 | 1e-104 | PREDICTED: ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 3e-42 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | B9H8L0 | 1e-100 | B9H8L0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s24450.1 | 1e-101 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 2e-29 | ERF family protein |
Publications ? help Back to Top | |||
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