PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG017716.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

SRS

Protein Properties

Length: 422aa MW: 43580.8 Da PI: 8.3405

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG017716.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	207.5	3.6e-64	207	364	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaeskke 99 s t++CqdCGnqakkdC+h+RCRtCCksrgfdC thvkstWvpaa+rrerq +++a a s+ +++ k++r +++q+++s+t++s+++++ + CCG017716.1 207 SATTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCVTHVKSTWVPAARRRERQLMATAGGGGGAGSTgSTSGVKKPRL--ISSQTTTSHTSTSNTTPR-S 301 57899*******************************************98888776666555536667777776..578888888888887655.5 PP DUF702 100 letss........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +tss lP v ++a frcvrv++v+dge+e+aYq++v+igGhvfkG+LydqG+e+ CCG017716.1 302 YDTSSshqgfkerLPGLVTAPATFRCVRVTAVEDGEDEFAYQAVVKIGGHVFKGFLYDQGVET 364 5555557899999*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	9.5E-61	209	363	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.0E-27	211	253	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.7E-27	314	362	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
VATTRSRQLL SDTGAFADWA TSNSSGIRTA GPDDLSLGFN AGPTGGGQTS GPTWPNSARP 60 INYGISPDMG MVGLRDVFVV APAGSFNHHH QHHEQINLST ADPINASNAT ALGVGVGVGV 120 IPLLAAGPCL APQNMDDQDL LNNGRNKING IHQFWQNQGS QYIKKASNTT PSILDHHNNS 180 STANFLLQSG NSAGNGSGSL GGNSSSSATT TCQDCGNQAK KDCSHRRCRT CCKSRGFDCV 240 THVKSTWVPA ARRRERQLMA TAGGGGGAGS TGSTSGVKKP RLISSQTTTS HTSTSNTTPR 300 SYDTSSSHQG FKERLPGLVT APATFRCVRV TAVEDGEDEF AYQAVVKIGG HVFKGFLYDQ 360 GVETRDGFPN ISELHLGGGS SSGGNGVGRN GASSSPILDP SDVYGASTGG LLGGSGYGNP 420 IN

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

VATTRSRQLL SDTGAFADWA TSNSSGIRTA GPDDLSLGFN AGPTGGGQTS GPTWPNSARP  60
INYGISPDMG MVGLRDVFVV APAGSFNHHH QHHEQINLST ADPINASNAT ALGVGVGVGV  120
IPLLAAGPCL APQNMDDQDL LNNGRNKING IHQFWQNQGS QYIKKASNTT PSILDHHNNS  180
STANFLLQSG NSAGNGSGSL GGNSSSSATT TCQDCGNQAK KDCSHRRCRT CCKSRGFDCV  240
THVKSTWVPA ARRRERQLMA TAGGGGGAGS TGSTSGVKKP RLISSQTTTS HTSTSNTTPR  300
SYDTSSSHQG FKERLPGLVT APATFRCVRV TAVEDGEDEF AYQAVVKIGG HVFKGFLYDQ  360
GVETRDGFPN ISELHLGGGS SSGGNGVGRN GASSSPILDP SDVYGASTGG LLGGSGYGNP  420
IN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011004205.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	2e-90	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	U5G3K7	0.0	U5G3K7_POPTR; Uncharacterized protein
STRING	POPTR_0009s07510.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	4e-83	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]