PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG017709.3

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HB-other

Protein Properties

Length: 539aa MW: 60912.1 Da PI: 8.241

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG017709.3	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.6e-19	21	75	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kRt t+ q+ +Le+++++++yp++e++ eLA+++gLte+q++ WF+ rR k+k+ CCG017709.3 21 KRTVKTPAQVVALENFYNEHKYPTEEMKSELADQIGLTEKQISSWFCHRRLKDKR 75 8****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-21	2	75	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.941	16	76	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.03E-17	18	81	IPR009057	Homeodomain-like
SMART	SM00389	3.3E-19	18	80	IPR001356	Homeobox domain
CDD	cd00086	4.78E-18	21	75	No hit	No description
Pfam	PF00046	7.7E-17	21	75	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	51	74	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MEESSEVHFG ENRVSPEKNL KRTVKTPAQV VALENFYNEH KYPTEEMKSE LADQIGLTEK 60 QISSWFCHRR LKDKRLRDEV CTNGRQDRSS GIIQDRGSGL RQDSCGSTKQ GDYRNLDPRE 120 VESQRLYGRD FHPADLTYER TTRYTGNVTG IDNISSGSSS SLQDKFVCQR EDPYDTETPK 180 YLAQNGAAMS LIPKGTDSFG YKPSGYLKVK GEIENAAITA VKMQLGRRYK EDGPPLGVEF 240 QPLPPGAFAS PIRDPVNGPI YVGDLAQICS PDVSGVRKQS SLGARYEVYS TKMSSHDSYT 300 EGANCNPEPS DSHDRKSHQL LEQKPTYNGS NSNAGGNSAM DMPDLAGETS AYVNKRHYRM 360 SSKHGFEGRR SDSLSTHLGP SGRRVNSEKT EAWLHDCDND NPKMVQRNSY TSKHPHSMRG 420 SGKSLDTEER AQCTIMEKED KLHGEMKRMK GSHDPVRVKR HPTDETTVAK RFRVDFPQQE 480 HVAKASFSEI RRRTNLTKWL VNISICNNNF MFSFFFLCTL IYVLSVACCV YMLCMFFQI

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MEESSEVHFG ENRVSPEKNL KRTVKTPAQV VALENFYNEH KYPTEEMKSE LADQIGLTEK  60
QISSWFCHRR LKDKRLRDEV CTNGRQDRSS GIIQDRGSGL RQDSCGSTKQ GDYRNLDPRE  120
VESQRLYGRD FHPADLTYER TTRYTGNVTG IDNISSGSSS SLQDKFVCQR EDPYDTETPK  180
YLAQNGAAMS LIPKGTDSFG YKPSGYLKVK GEIENAAITA VKMQLGRRYK EDGPPLGVEF  240
QPLPPGAFAS PIRDPVNGPI YVGDLAQICS PDVSGVRKQS SLGARYEVYS TKMSSHDSYT  300
EGANCNPEPS DSHDRKSHQL LEQKPTYNGS NSNAGGNSAM DMPDLAGETS AYVNKRHYRM  360
SSKHGFEGRR SDSLSTHLGP SGRRVNSEKT EAWLHDCDND NPKMVQRNSY TSKHPHSMRG  420
SGKSLDTEER AQCTIMEKED KLHGEMKRMK GSHDPVRVKR HPTDETTVAK RFRVDFPQQE  480
HVAKASFSEI RRRTNLTKWL VNISICNNNF MFSFFFLCTL IYVLSVACCV YMLCMFFQI

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ395635	1e-34	FQ395635.1 Vitis vinifera clone SS0AFA14YN23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011004076.1	0.0	PREDICTED: uncharacterized protein LOC105110671
TrEMBL	A0A2K1Z474	0.0	A0A2K1Z474_POPTR; Uncharacterized protein
STRING	POPTR_0009s07600.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5792	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	3e-87	HB-other family protein