PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017618.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 337aa    MW: 37946.4 Da    PI: 7.3956
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017618.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.3e-12159206355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  CCG017618.1 159 QDHIIAERKRREKLSQRFIALSAVVPGL-----KKMDKASVLGDAIKYLKQLQ 206
                  6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.91156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-10159206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-17160218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-17160222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.79E-13161210No hitNo description
SMARTSM003531.0E-14162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
METSSITALY ELGMEDPGFT NQWYMNSLDD ISLLPLAAAA FGENVHHPFS HQNFNLKTPM  60
DSNPTSINVR PPKQMKTFHL SDPQSAFSPN FLSFVNPNHA NQMGLVKPKE EAVCSQSINN  120
FPSDMVVSQD IFGSQNYVFK ACQGPERIST NTTRLSQSQD HIIAERKRRE KLSQRFIALS  180
AVVPGLKKMD KASVLGDAIK YLKQLQEKVK TLEEQTKRKT MESVVIVKKS HIYVDEGDVN  240
SSSDESKGPI HETLPEIEAR FCDKHVLIRI HCEKRKGVLE KTVAEIEKLH LSVINSSVLA  300
FGTSALHVTF IAQMDIDFNL SLKDLVKTLR SAFEFFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14160209857Transcription factor MYC2
5gnj_B1e-14160209857Transcription factor MYC2
5gnj_E1e-14160209857Transcription factor MYC2
5gnj_F1e-14160209857Transcription factor MYC2
5gnj_G1e-14160209857Transcription factor MYC2
5gnj_I1e-14160209857Transcription factor MYC2
5gnj_M1e-14160209857Transcription factor MYC2
5gnj_N1e-14160209857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164169ERKRRE
2165170RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002806.10.0PREDICTED: transcription factor bHLH18-like isoform X1
SwissprotQ9T0722e-63BH025_ARATH; Transcription factor bHLH25
TrEMBLB9HN590.0B9HN59_POPTR; Uncharacterized protein
STRINGPOPTR_0009s08500.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-66bHLH family protein