PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017571.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Nin-like
Protein Properties Length: 676aa    MW: 76299.5 Da    PI: 5.7617
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017571.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.66.1e-29360410252
       RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  ek+isl++l+kyF++++kdAAk++gvc+T+LKr CRqyGI+RWP+Rkik++
  CCG017571.1 360 EKTISLQVLRKYFAGSLKDAAKSIGVCPTTLKRMCRQYGISRWPSRKIKKV 410
                  79***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF514452.37E-668139IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.802.2E-569141IPR013781Glycoside hydrolase, catalytic domain
PROSITE profilePS5151916.972349430IPR003035RWP-RK domain
PfamPF020428.3E-24362410IPR003035RWP-RK domain
SuperFamilySSF542773.36E-21571663No hitNo description
Gene3DG3DSA:3.10.20.2402.5E-20576657No hitNo description
SMARTSM006661.1E-20577660IPR000270PB1 domain
PROSITE profilePS5174519.025577660IPR000270PB1 domain
CDDcd064076.39E-35578657No hitNo description
PfamPF005641.5E-13578657IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MNFSAWVQIS EGSETVDVIF KTTHGEWIRG GSVVAKHGCW SLLKGGMVAH LSGPVEIFFV  60
CNNTRVEVWI DNVSFQPFTT QQWRSHRDKS IEEFVSQKAR STALPIWLTE VDVQKGPYQA  120
QYFESILREG YSHPAVQGNL VDKLIAEWKT RTLKVIADSK GFAEASLFQR TTSDTFMDLN  180
FTDELLVQRY WWESAGGVNF LDPEPSISKD LCDPSQYLPF MGSGHLSINP HHLTCQEETD  240
ISLENPPVVY PETEEQIVET ITSPVHSEGS QLESGEFVLE FCESWECPKQ EPEEEETLQE  300
TTDSDNNDLD QYQEREFSDF GQLQQNPERC TVESARDSFV PWSHLLGSRK TGKKRQTKTE  360
KTISLQVLRK YFAGSLKDAA KSIGVCPTTL KRMCRQYGIS RWPSRKIKKV NHSLKKLQHV  420
VDSVMGPQGL IEIDSFYTAF PELSSSGYFG HNPFSSFQIT DYPKESNPKP INHLFSTKGP  480
VSKSQSSSSS QNSGLFICHG KRQLTSTING LSTGHALAVE DPVEVLKRTR SKSELPSLNK  540
EELDRAKSNE TSCQNKNLET QASLPISNGQ CLRDGGAFRI KATFGGENIR FSLQPNWGFR  600
DLQREIAKRF EIDDFSRIGL KYLDSDHESI LLTCDADLEE CKDVLGFSQS RTIKITLYLV  660
SKPNLGSSFS SSRDLF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002054.10.0PREDICTED: protein NLP2-like
RefseqXP_011002061.10.0PREDICTED: protein NLP2-like
SwissprotQ7X9B92e-90NLP2_ARATH; Protein NLP2
TrEMBLA0A3N7FP050.0A0A3N7FP05_POPTR; Uncharacterized protein
STRINGPOPTR_0009s09060.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2820433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.13e-88Nin-like family protein