PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG017558.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 361aa MW: 39120.8 Da PI: 4.5337 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32 | 2.3e-10 | 287 | 327 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq CCG017558.1 287 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 327 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.148 | 277 | 326 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-14 | 279 | 344 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.2E-13 | 282 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-11 | 283 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.66E-12 | 286 | 331 | No hit | No description |
Pfam | PF00010 | 1.1E-7 | 287 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MESIGSMAEG EWSSLGGMYT SEEADFMAQL LGNCPPNQVD SSSNFGVPSS FWPNHEPTTD 60 MEGANECSFY SLDFANINLH HFSQGSSSYS GGSGILFPNT SQDSYYMSDS HPILAINNSS 120 MSMDFCMGDS YLVEGDDCSN QEMSNSNEEP GGNQTVAALP ENDFRAKREP EMPASELPLE 180 DKNSNPPQIS KKRSRNSGDA QKNKRNASSK KSQKVASTSN NDEGSDAGLN GPASSGCCSE 240 DESNASHELN RGASSSLSSK GTATLNSSGK TRASRGAATD PQSLYARKRR ERINERLRIL 300 QNLVPNGTKV DISTMLEEAV QYVKFLQLQI KLLSSEDMWM YAPIAYNGMD IGLDHLKVTA 360 P |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011001917.1 | 0.0 | PREDICTED: transcription factor bHLH84-like isoform X1 | ||||
TrEMBL | A0A2K1Z543 | 0.0 | A0A2K1Z543_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s09210.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF807 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 1e-52 | bHLH family protein |