PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG017558.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 361aa MW: 39120.8 Da PI: 4.5337

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG017558.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32	2.3e-10	287	327	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq CCG017558.1 287 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 327 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.148	277	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-14	279	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.2E-13	282	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-11	283	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.66E-12	286	331	No hit	No description
Pfam	PF00010	1.1E-7	287	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MESIGSMAEG EWSSLGGMYT SEEADFMAQL LGNCPPNQVD SSSNFGVPSS FWPNHEPTTD 60 MEGANECSFY SLDFANINLH HFSQGSSSYS GGSGILFPNT SQDSYYMSDS HPILAINNSS 120 MSMDFCMGDS YLVEGDDCSN QEMSNSNEEP GGNQTVAALP ENDFRAKREP EMPASELPLE 180 DKNSNPPQIS KKRSRNSGDA QKNKRNASSK KSQKVASTSN NDEGSDAGLN GPASSGCCSE 240 DESNASHELN RGASSSLSSK GTATLNSSGK TRASRGAATD PQSLYARKRR ERINERLRIL 300 QNLVPNGTKV DISTMLEEAV QYVKFLQLQI KLLSSEDMWM YAPIAYNGMD IGLDHLKVTA 360 P

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MESIGSMAEG EWSSLGGMYT SEEADFMAQL LGNCPPNQVD SSSNFGVPSS FWPNHEPTTD  60
MEGANECSFY SLDFANINLH HFSQGSSSYS GGSGILFPNT SQDSYYMSDS HPILAINNSS  120
MSMDFCMGDS YLVEGDDCSN QEMSNSNEEP GGNQTVAALP ENDFRAKREP EMPASELPLE  180
DKNSNPPQIS KKRSRNSGDA QKNKRNASSK KSQKVASTSN NDEGSDAGLN GPASSGCCSE  240
DESNASHELN RGASSSLSSK GTATLNSSGK TRASRGAATD PQSLYARKRR ERINERLRIL  300
QNLVPNGTKV DISTMLEEAV QYVKFLQLQI KLLSSEDMWM YAPIAYNGMD IGLDHLKVTA  360
P

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011001917.1	0.0	PREDICTED: transcription factor bHLH84-like isoform X1
TrEMBL	A0A2K1Z543	0.0	A0A2K1Z543_POPTR; Uncharacterized protein
STRING	POPTR_0009s09210.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF807	33	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	1e-52	bHLH family protein