PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 101aa MW: 11148.3 Da PI: 9.1046

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG017323.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.2	9.2e-09	12	57	2	45
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 g+WT++ + + +a + + + +W +ar +g g+t++++k ++ CCG017323.1 12 GSWTAQQNKAFERALAVYDRDtpdRWYNVARAVG-GKTAEEVKRHYE 57 89***************99*********.********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.421	9	64	IPR017884	SANT domain
SMART	SM00717	5.0E-8	10	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.9E-6	12	66	IPR009057	Homeodomain-like
Pfam	PF00249	3.2E-6	12	57	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.8E-13	12	68	IPR009057	Homeodomain-like
CDD	cd00167	1.04E-6	14	60	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MASSSMSSRG SGSWTAQQNK AFERALAVYD RDTPDRWYNV ARAVGGKTAE EVKRHYELLV 60 EDVKHIESGH VPFPNYRTTG ANGHARAESN QVRCHGVTGT V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	1e-40	7	82	3	79	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269\|PubMed:15790677}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269\|PubMed:15790677, ECO:0000269\|PubMed:16236768}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011048444.1	4e-59	PREDICTED: protein RADIALIS-like 1
Swissprot	Q58FS3	2e-40	RAD_ANTMA; Transcription factor RADIALIS
TrEMBL	B9HRM8	5e-57	B9HRM8_POPTR; Uncharacterized protein
STRING	POPTR_0009s11930.1	8e-58	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF154	34	280

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39250.1	2e-39	RAD-like 1

Publications ? help Back to Top
Corley SB,Carpenter R,Copsey L,Coen E Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum. Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73 [PMID:15790677] Costa MM,Fox S,Hanna AI,Baxter C,Coen E Evolution of regulatory interactions controlling floral asymmetry. Development, 2005. 132(22): p. 5093-101 [PMID:16236768] Stevenson CE, et al. Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8 [PMID:16511186] Stevenson CE, et al. Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus. Proteins, 2006. 65(4): p. 1041-5 [PMID:17044043]