PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017317.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 428aa    MW: 47535.1 Da    PI: 6.0227
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017317.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.6e-10248295455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  CCG017317.1 248 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 295
                  8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.67E-10242299No hitNo description
SuperFamilySSF474595.76E-17242313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-17244312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.618244294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-7248295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9250300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MINRALLPAG GEENMLHCTD ITVLERQRAC IKWQQEQQQQ QQQVQLQQQE ISYFTELTGV  60
FQQAGFHEGG LNEVVTRSVK PDPGLVDNRW NNDHLVGFGV GPPYNNGPGF ELNYGSISRT  120
SSCPPPVVAA VAAATVKGSE SVVSDKISSG VGREISKKRK VDDKQNNSKV DAEEDTRDKR  180
IKGCAEEGES KITEKNNNKN RRNNNTNKNN NSNKESSAGN SKDNSKVTEV QKPDYIHVRA  240
RRGQATDSHS LAERVRREKI SERMKYLQDL VPGCNKITGK AGMLDEIINY VQSLQRQVEF  300
LSMKIATVNP RLDFNVDNLF AREAFPACSV NFPTIGMSSD MTNPAYLQFN PAQQQLVTCC  360
GLDMGIDPPD MGLKRTTSSP ESIPETFLDS SCFTQAHPPP AWDADLQNLY NVAFDQGSIE  420
ASNLKMEM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048311.10.0PREDICTED: transcription factor bHLH63-like isoform X2
TrEMBLB9HRM40.0B9HRM4_POPTR; Uncharacterized protein
STRINGPOPTR_0009s12000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.12e-64cryptochrome-interacting basic-helix-loop-helix 1