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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
CCG017250.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 326aa MW: 36376.3 Da PI: 10.0021 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| CCG017250.1 | genome | LZU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 351.1 | 2.5e-107 | 1 | 326 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye...........................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkala 68
mdd g+++ r k yy+ ++++l+ +++++m+++ erd++irernlal+ekk+a+a+rd+a +qr+kal
CCG017250.1 1 MDDGGQHQngRYKMdYYKaahphphphphphppawnmmsqhqvkeQTNALA--MNKKIMTILIERDDAIRERNLALAEKKEALAARDEAIQQREKALV 96
788877666888877888999999999999999999998777643335555..99******************************************* PP
GAGA_bind 69 ernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakk 166
er+kal+erdn+l+a++++en+++ +l + ++ +g+k i + +++ +a ++ e+++++alpi++ + e+ +++++k+++++k k ak+
CCG017250.1 97 ERDKALMERDNALAAIQHRENAMNYSL--SGGSQRGSKRIPHPVY--HSNGMSEALDTGEMHITDALPISSVTAETGKARQTKRSKENKAVGLKAAKS 190
*********************988777..4566799999997766..77777889999*************999999999999888888887788888 PP
GAGA_bind 167 kkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqg 263
++k s++ ++ +k+ +d ++ k e++s+d++ln +++De+t+P+PvCsCtG++rqCYkWG+GGWqSaCCttt+S yPLP+++++r+aRi+grKmS++
CCG017250.1 191 PRKGSRVGEDLNKQGASDgKKIKVEWDSQDVGLNLINFDETTMPAPVCSCTGVPRQCYKWGSGGWQSACCTTTMSSYPLPQMPNKRHARIGGRKMSGN 288
888766666655555555699***************************************************************************** PP
GAGA_bind 264 afkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+f++lL++LaaeG+dls p+DLkd+WA+HGtn+++ti+
CCG017250.1 289 VFTRLLSRLAAEGHDLSIPLDLKDFWARHGTNRYITIK 326
*************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 326 aa
Download sequence Send
to blast |
MDDGGQHQNG RYKMDYYKAA HPHPHPHPHP HPPAWNMMSQ HQVKEQTNAL AMNKKIMTIL 60
IERDDAIRER NLALAEKKEA LAARDEAIQQ REKALVERDK ALMERDNALA AIQHRENAMN 120
YSLSGGSQRG SKRIPHPVYH SNGMSEALDT GEMHITDALP ISSVTAETGK ARQTKRSKEN 180
KAVGLKAAKS PRKGSRVGED LNKQGASDGK KIKVEWDSQD VGLNLINFDE TTMPAPVCSC 240
TGVPRQCYKW GSGGWQSACC TTTMSSYPLP QMPNKRHARI GGRKMSGNVF TRLLSRLAAE 300
GHDLSIPLDL KDFWARHGTN RYITIK
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EF148646 | 0.0 | EF148646.1 Populus trichocarpa x Populus deltoides clone WS0135_K07 unknown mRNA. |
