PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG016967.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 500aa    MW: 55282.4 Da    PI: 5.107
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG016967.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.45.2e-48191451128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                  + pGfrF+Ptd el+++yLk k+eg +  + evi+e++i+k+ePwdLp k+v ++e+ew+fFs r +ky++g++++rat+ gyWkatgk+++v+s ++
  CCG016967.1  19 MFPGFRFSPTDVELISYYLKLKIEGAEKCV-EVISEIEICKHEPWDLPaKSVIQSENEWFFFSARGRKYPNGSQSKRATELGYWKATGKERNVKS-GS 114
                  579************************777.99***************667777899**************************************.99 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                   ++g+k+tLvf+ grapkge+t+W+mhey +
  CCG016967.1 115 DVIGTKRTLVFHVGRAPKGERTEWIMHEYCM 145
                  9****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-5210160IPR003441NAC domain
PROSITE profilePS5100551.28519161IPR003441NAC domain
PfamPF023658.7E-2421144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0033619Biological Processmembrane protein proteolysis
GO:0048573Biological Processphotoperiodism, flowering
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MASGEVSRET QMSIEATSMF PGFRFSPTDV ELISYYLKLK IEGAEKCVEV ISEIEICKHE  60
PWDLPAKSVI QSENEWFFFS ARGRKYPNGS QSKRATELGY WKATGKERNV KSGSDVIGTK  120
RTLVFHVGRA PKGERTEWIM HEYCMQGQSQ DSLVVCRLRK NAEFRPNDTS NRGDVNERHL  180
STTHNSSNAV SDGGIDQGGV PASENAAECS KSCESYSIEQ LSSASESELK LSNDVALAGS  240
SSHQKDSDNE EDFYADIMKD DIIKLDETPF CAPSGLRSLV ASKSEAETRP KQPVEMFMSE  300
ALPLRSILSQ GTSNQPVQIF MSEALPLRPV PSQGTENQPV EMFMSEALPL SSISSQGTEN  360
QPVEMFMSEA LRLSSISSQG TENQPVEMFM SEAIPLHSIL GTENQPAEIF MSEALPSPSI  420
YSQGTANRRI KLRRQMPGMS QAEMHVNNVA EESKLPCSKE PPNRVLSLLS AKTGKLRHIS  480
IVFIILTFLL LLVNLLGGFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-40101612165NO APICAL MERISTEM PROTEIN
1ut4_B5e-40101612165NO APICAL MERISTEM PROTEIN
1ut7_A5e-40101612165NO APICAL MERISTEM PROTEIN
1ut7_B5e-40101612165NO APICAL MERISTEM PROTEIN
3swm_A5e-4011617168NAC domain-containing protein 19
3swm_B5e-4011617168NAC domain-containing protein 19
3swm_C5e-4011617168NAC domain-containing protein 19
3swm_D5e-4011617168NAC domain-containing protein 19
3swp_A5e-4011617168NAC domain-containing protein 19
3swp_B5e-4011617168NAC domain-containing protein 19
3swp_C5e-4011617168NAC domain-containing protein 19
3swp_D5e-4011617168NAC domain-containing protein 19
4dul_A5e-40101612165NAC domain-containing protein 19
4dul_B5e-40101612165NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1426433NRRIKLRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00280DAPTransfer from AT2G27300Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043268.10.0PREDICTED: NAC domain-containing protein 89-like isoform X1
SwissprotQ9XIN74e-95NAC40_ARATH; NAC domain-containing protein 40
TrEMBLA0A2K1Z8S20.0A0A2K1Z8S2_POPTR; Uncharacterized protein
STRINGPOPTR_0009s16290.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73153346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.11e-94NTM1-like 8
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. Tian H, et al.
    NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1.
    Plant Physiol., 2017. 174(4): p. 2363-2375
    [PMID:28649093]