PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG016871.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 178aa    MW: 19940.2 Da    PI: 5.9421
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG016871.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-191465156
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 s y+GVr +k +g+Wv+eIr+p   gk+ r++lg+f t+e+Aa+a++ a++ ++g+
  CCG016871.1 14 SSYRGVRKRK-WGKWVSEIREP---GKKNRIWLGSFETPEMAAAAYDVAALHFRGH 65
                 67*****999.**********8...5579**********************99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.18E-231473IPR016177DNA-binding domain
CDDcd000184.52E-231474No hitNo description
PfamPF008471.9E-121465IPR001471AP2/ERF domain
PROSITE profilePS5103223.7091572IPR001471AP2/ERF domain
SMARTSM003801.5E-371578IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-321573IPR001471AP2/ERF domain
PRINTSPR003671.5E-121627IPR001471AP2/ERF domain
PRINTSPR003671.5E-125474IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MEERNTASHG GVSSSYRGVR KRKWGKWVSE IREPGKKNRI WLGSFETPEM AAAAYDVAAL  60
HFRGHDARLN FPDLVHNLPK PTSSSSEDIR MAAHEAAMSL RPFTAESSHG GSSTSNVGPI  120
TVRLSASQIQ AINESPLDSP KMWMQMSEIA MLEESMVFSN NIEEDEWDNK QTYSLWDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-171677668ATERF1
3gcc_A4e-171677668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005172.11e-130PREDICTED: ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I22e-64ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLB9IQB61e-113B9IQB6_POPTR; Uncharacterized protein
STRINGPOPTR_0019s10420.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.18e-67ERF family protein