PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG016777.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 1000aa    MW: 111196 Da    PI: 6.8128
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG016777.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.91.1e-24156257199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae++       +  ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + +++e
  CCG016777.1 156 FCKTLTASDTSTHGGFSVPRRAAEDCfppldytQ--QRPSQELVAKDLHGSEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGEDGE 249
                  99****************************9743..345679************************************************..449999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++v+r+
  CCG016777.1 250 LRLGVRRA 257
                  *****996 PP
2Auxin_resp123.41.6e-40282363182
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                  +a+a+st+svF+++YnPras+seF+++++k++k+l++++s GmRfkm+feted++err++G+++gvs+ldp rWp+SkW++L
  CCG016777.1 282 VANAISTRSVFHIYYNPRASSSEFIIPFNKFLKSLDQSFSSGMRFKMRFETEDAAERRYTGIITGVSELDPARWPGSKWKCL 363
                  689******************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.11E-42151283IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-40152258IPR015300DNA-binding pseudobarrel domain
CDDcd100173.31E-22154256No hitNo description
PfamPF023621.8E-22156257IPR003340B3 DNA binding domain
SMARTSM010192.7E-23156258IPR003340B3 DNA binding domain
PROSITE profilePS5086313.535156258IPR003340B3 DNA binding domain
PfamPF065073.1E-35282363IPR010525Auxin response factor
PfamPF030948.1E-19718780IPR004326Mlo-related protein
PfamPF030943.1E-11792845IPR004326Mlo-related protein
PfamPF030944.6E-6843875IPR004326Mlo-related protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1000 aa     Download sequence    Send to blast
MVGLIDLNTI EEDETTPSCG SLSSPSSSSA ASALSASGSG SGSSTSSVCL ELWHACAGPL  60
ISLPKRGSVV VYFPQGHLEQ LPDLPLAVYD LPPHVFCRVV DVKLHAEAAS DEVYAQVSLV  120
PESEEIEQKL REGIFEGDGE EEDGETTVKM TTPHMFCKTL TASDTSTHGG FSVPRRAAED  180
CFPPLDYTQQ RPSQELVAKD LHGSEWKFRH IYRGQPRRHL LTTGWSAFVN KKKLVSGDAV  240
LFLRGEDGEL RLGVRRAAQV KCGPTFPALW NNQLNQISPG DVANAISTRS VFHIYYNPRA  300
SSSEFIIPFN KFLKSLDQSF SSGMRFKMRF ETEDAAERRY TGIITGVSEL DPARWPGSKW  360
KCLLVRWDDM EPNRLSRVSP WEVEPSGSGS ISSSNNFMAP GLKRSRSGLP SSKAEFPIPD  420
GIGAPGFRES SRSQEVLQGQ EIMSFNALYD GVDGQNQYPS EIRSCFPGSH SSGIAALGSG  480
IRDSISTSNN SYKGIGFNES YRFRKVFEGQ EIFPSSSYGR IPNANEAREN CSLRFSDGAQ  540
RSSSRNGWST MMQGYNTQIR PSAQVSSPSS VLMFQHASNP VPKPSSNFNF NDHVQQTATT  600
RSWFCGPEMQ GGNFKLSAHS EPSVKRDGQW SNNPFGLSHE HLQHGVSQPI AAQDLVSYKS  660
SCRLFGFSLT EDKCLVNKED NLTLITSPLN PGSSFLPRPG EHFHTKPPAI NNAVGSSCTE  720
YFNKKRRKYL IPALYKIKTE LMLLGFISLL LTVLEKPVAN ICIPKSASET FLPCGGVDSS  780
DWSEEEAKCA EQMRRWESWE AETRTLDYQF STDPRRFQLS HQTPFGKRHL RYWNENSVLR  840
WPAHFDQDNS FDFQKYIRRA LDKDFGVLVG IRILQLLLAS IYSTTENVVE GLKRWRAKAR  900
KNRKISYSVR PSLDASVDPS LAVDTSPSFS LGASYSIDPN GPLDRDHVTT EVIDEAKHKD  960
EQPREHKRNG SFEGFNVSNV DPDMEKQSNA DPDMEKQSGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-114313922361Auxin response factor 1
4ldy_B1e-114313922361Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1723727KKRRK
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001217.10.0PREDICTED: auxin response factor 3-like
SwissprotO236610.0ARFC_ARATH; Auxin response factor 3
TrEMBLU5FVV30.0U5FVV3_POPTR; Auxin response factor
STRINGPOPTR_0011s05830.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45763355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.10.0ARF family protein
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Thoma R,Chandler JW
    Polarity in the early floral meristem of Arabidopsis.
    Plant Signal Behav, 2015. 10(4): p. e992733
    [PMID:25806573]
  3. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  4. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  5. Cabrera J, et al.
    Differentially expressed small RNAs in Arabidopsis galls formed by Meloidogyne javanica: a functional role for miR390 and its TAS3-derived tasiRNAs.
    New Phytol., 2016. 209(4): p. 1625-40
    [PMID:26542733]
  6. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]
  7. Yamaguchi N,Wu MF,Winter CM,Wagner D
    LEAFY and Polar Auxin Transport Coordinately Regulate Arabidopsis Flower Development.
    Plants (Basel), 2014. 3(2): p. 251-65
    [PMID:27135503]
  8. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  9. Simonini S, et al.
    A noncanonical auxin-sensing mechanism is required for organ morphogenesis in Arabidopsis.
    Genes Dev., 2016. 30(20): p. 2286-2296
    [PMID:27898393]
  10. Pfannebecker KC,Lange M,Rupp O,Becker A
    An Evolutionary Framework for Carpel Developmental Control Genes.
    Mol. Biol. Evol., 2017. 34(2): p. 330-348
    [PMID:28049761]
  11. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  12. Su Z, et al.
    The THO Complex Non-Cell-Autonomously Represses Female Germline Specification through the TAS3-ARF3 Module.
    Curr. Biol., 2017. 27(11): p. 1597-1609.e2
    [PMID:28552357]
  13. Simonini S,Bencivenga S,Trick M,Østergaard L
    Auxin-Induced Modulation of ETTIN Activity Orchestrates Gene Expression in Arabidopsis.
    Plant Cell, 2017. 29(8): p. 1864-1882
    [PMID:28804059]
  14. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  15. Simonini S, et al.
    Corrigendum: A noncanonical auxin-sensing mechanism is required for organ morphogenesis in Arabidopsis.
    Genes Dev., 2017. 31(17): p. 1821
    [PMID:28982764]
  16. Zhang K, et al.
    AUXIN RESPONSE FACTOR3 Regulates Floral Meristem Determinacy by Repressing Cytokinin Biosynthesis and Signaling.
    Plant Cell, 2018. 30(2): p. 324-346
    [PMID:29371438]
  17. Vial-Pradel S, et al.
    Arabidopsis Zinc-Finger-Like Protein ASYMMETRIC LEAVES2 (AS2) and Two Nucleolar Proteins Maintain Gene Body DNA Methylation in the Leaf Polarity Gene ETTIN (ARF3).
    Plant Cell Physiol., 2018. 59(7): p. 1385-1397
    [PMID:29415182]
  18. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]
  19. Andres-Robin A, et al.
    Evidence for the Regulation of Gynoecium Morphogenesis by ETTIN via Cell Wall Dynamics.
    Plant Physiol., 2018. 178(3): p. 1222-1232
    [PMID:30237208]
  20. Hablak SG
    Features inheritance of root system Arabidopsis thaliana (L.) Heynh. the interaction of genes CTR1 AND ALF3, NPH4 and IAR2.
    Tsitol. Genet., 2019.
    [PMID:30484609]