PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG016692.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 1721aa    MW: 189520 Da    PI: 6.306
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG016692.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.1e-07801842346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT +E e++ +  + +G++ ++++a+ +  +++  +c+++++k
      CCG016692.1 801 PWTSDEKEIFMHKLATFGKD-FRKVASFLD-HKSTADCVEFYYK 842
                      8*****************99.*********.***********98 PP
2Myb_DNA-binding31.73.6e-1010131053345
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45  
                        WT eE   +++av  +G++ ++ I++ +  +Rt++qck ++ 
      CCG016692.1 1013 DWTDEEKFMFIQAVSSYGKD-FAMISHFVR-TRTRYQCKVFFS 1053
                       5*****************99.*********.********8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.28E-13785845IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-4793843IPR009057Homeodomain-like
PROSITE profilePS5129314.935797848IPR017884SANT domain
SMARTSM007171.3E-6798846IPR001005SANT/Myb domain
PROSITE profilePS5129311.59710091060IPR017884SANT domain
SMARTSM007174.0E-810101058IPR001005SANT/Myb domain
SuperFamilySSF466892.34E-1110111060IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.8E-610131054IPR009057Homeodomain-like
PfamPF002491.1E-710131053IPR001005SANT/Myb domain
CDDcd001674.34E-710141052No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1721 aa     Download sequence    Send to blast
MPPEPLPWDR KDFFKERKHE RSETTSSSFG GGSTSRWKEF SYSSSSHYGS SRDFNRWGPH  60
DFRRPPGHGK QGGWHMLAEE SGHVYAPYRS SDKMLEDDNC RPFLRGDGRY VRNNRGYFSQ  120
RDWRGGHSWE MNNGSSNMPV RQHDVSNDHV SVDEMLIFPP SQPPHSAFVN SWDQHQLKDQ  180
QDNNKMSGVH GLGSGQRGDR ENSLDWKPLK WIRSGSLSSR GSGLSHSSSS KSLGGADSNE  240
GKAELQLKNA TPVHSLSGDV AACVTSAAPS EEISSRKKAR LGWGEGLAKY EKKRVEGPET  300
SDNKDGAVVS ANNAESIHYQ ISNLAEKSHG VMGFSDCASP ATPSSVACSS SPGLEEKTSV  360
KLTNADNVVS NSCGSPSVGS QSQIEGLCFN LEKMDVSSVA NLGSSLAELL QSDDPTSVDS  420
SFVRSTAMNK LLVWKGDISK SLELTESEID SLENELKSMR FESGNRFPCL ASSSPRLFDS  480
DAKPCNVQGV SSNSAPRPSP LQVASCGDEI VEKVSFCNGE LEEAHADVKD DDIDSPGTAT  540
SKLVEPVFLA RADSSTVTVK DDFDAIQSAR MNLKGVVPCA DKEVTGIFTC KEDLPSGDGI  600
SDTYGEDNLC NLILASNKES ASRASEVFNK LLPSEQCRFD FSGVIKGSSW QSDALVVENF  660
ATRKRLLRFK ERAVTLKFKA FHHLWKEDMR LLSIRKHRAK SHKKCEQSLR TTQSGFQKHR  720
SSIRARFSSP AGNLNLVPTT EMLNFTSKLF ADSQLKLYRN ALKMPALILD KKERIVSRFI  780
SSNGLVEDPC AVEKERAMIN PWTSDEKEIF MHKLATFGKD FRKVASFLDH KSTADCVEFY  840
YKNHKSDCFE KTKKSVQTKS STNYLVASST KWNRELNAAS LDIFGAVMAA GADHAMNSRR  900
LCSSRIFSRG YRNSKITEVC DDGILEGSSI LDVLGSERET VAADVLAGIC GSMSSEAMSS  960
CITTSVDLVE GYRERKCQKL DSVAKPPLTS DVMRNFDEET CSDESCEEMD PTDWTDEEKF  1020
MFIQAVSSYG KDFAMISHFV RTRTRYQCKV FFSKARKCLG LDLMHPGHRN IGTPVSDVGN  1080
GGGSDTEDAC AIETGSAISS DKLDSKVDED LLLSVMNTEH NESDAEERIR LHSDPDGTED  1140
NNASGILDQN DSKIVDKMVS DPAEAGQRAD PAFVVDNKVM NSVNQLESLQ AQKVLIVSTN  1200
VESERDQVAD KTVSVAEAGP VIGTVDASTS NANTAVELKA VAEVSNEVSG QGLLLPEKSL  1260
CSPSGLMQDS TGNASHHRVN MDSCSDIRRG SENIHQVSVQ LESVGKPPVI SLPQENDLSI  1320
TNAVVQDSVV IQYEKKHEQL QECRDKQGKT SFCRENYFQR LSGHPLTSQN DSSQILRGYP  1380
QQVPTKKEMN GDIYVRPLSE AQSFPKSEKN VTSEKNVTSQ FEVEDCYSQK CSGAKSQHPV  1440
SELPFLSERF ELGSDRPRDH SRRSSDMEKP SGMEKPCRNG DVKLFGKILS NPLQKQNSIA  1500
HENGEKEVPH LKPAGKSATF KLTGHHPTEG NMAFLKCDRN NQLGPENFHM SHRFWDERTQ  1560
TGLPDSAALL AKYPAAFSNY TVPSSKMPQQ TLQSVVKSNE CNQNGTSVFP SREVSGTNGV  1620
VDYQMYRNHD SAGVQPFTVD MKQREDIFVE MPRLNGQQVR GMVGMNVVEK GGVLVGGPCT  1680
GVSDPVVAIK RHYAKSDQYG GQNGTVFREE ESWRGKGDLG R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C7e-14759850494NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D7e-14759850494NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031768.10.0PREDICTED: uncharacterized protein LOC105130796 isoform X1
RefseqXP_011031769.10.0PREDICTED: uncharacterized protein LOC105130796 isoform X1
TrEMBLB9HLN10.0B9HLN1_POPTR; Uncharacterized protein
STRINGPOPTR_0008s04150.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49863352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-175MYB family protein