![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG016668.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 730aa MW: 80636.8 Da PI: 6.6478 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.6 | 5.5e-24 | 129 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF + +++ CCG016668.1 129 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAENGD 222 89****************************986555555..8999*********************************************..448899 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+v+++r+ CCG016668.1 223 LCVGIRRA 230 9****997 PP | |||||||
2 | Auxin_resp | 118 | 7.6e-39 | 282 | 365 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Prast+eF+v+++ v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+ CCG016668.1 282 AASLAANGQPFEVVYYPRASTPEFCVRASAVRTAMHIQWCPGMRFKMAFETEDSSRISWfMGTISSVQFADPIRWPNSPWRLLQ 365 68899*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.28E-30 | 122 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-37 | 122 | 233 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.38E-22 | 128 | 229 | No hit | No description |
Pfam | PF02362 | 4.2E-22 | 129 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.4E-23 | 129 | 231 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.38 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.0E-33 | 282 | 365 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 18.298 | 599 | 679 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 730 aa Download sequence Send to blast |
MIREFQVMNP PKEQMRVAEK CLDSQLWHAC AGSMVQMPAV NSKVFYFPQG HAEHAQGSVD 60 FGHFQIPALI PCKVSAIKYM AEPETDEVYA KIRLNPSSNS DLMFGDGCGE DSDDRLPNGI 120 ESQEKPASFA KTLTQSDANN GGGFSVPRYC AETIFPRLDY TAEPPVQTIL AKDVHGETWK 180 FRHIYRGTPR RHLLTTGWSN FVNQKKLVAG DSIVFLRAEN GDLCVGIRRA KRGIGGGNEC 240 SSGWNSFGGY SGFLREDESK LMRRNGNGDV KGKVKPESVI EAASLAANGQ PFEVVYYPRA 300 STPEFCVRAS AVRTAMHIQW CPGMRFKMAF ETEDSSRISW FMGTISSVQF ADPIRWPNSP 360 WRLLQVAWDE PDLLQNVKRV SPWLAELVSN MPAIHLSPFS PPRKKLRLPQ PPDFPLIGQI 420 PMPSFTGIPL RSNSPLCCVS DNIPAGIQGA RHAQFELSSS DLHFNKLQSG LFPVDFQRRD 480 QAASPSRITS SNFMGNTKKS ENISCLLTMG SSSQSLKGSS ETKTPHFVLF GQLIVTDQQS 540 SQSCSGDTNA NSSSDGNLGK ASSDGSGSAL QQNGPMENSS DERSPWYKDH QKTDLGLETD 600 HCKVFMESED IGRTLDLSVL GSYEELHRKL ASMFGIESSE MLSNVLYRDA AGATKHAGDE 660 PFSEFLKTAR RLTILSYASR DNFGSLQGYA GFVCMYIMQV WHNSSCPLES LQRTIVVDAE 720 SISTNSCSEF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-78 | 1 | 386 | 33 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
![]() |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011031734.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | B9HLK7 | 0.0 | B9HLK7_POPTR; Auxin response factor | ||||
STRING | POPTR_0008s03890.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF637 | 34 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
---|---|---|---|
|