PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG016545.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 251aa    MW: 26916.9 Da    PI: 7.415
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG016545.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.91.3e-06205230630
                  HHHHHHHHHHHHHHHHHHHCTSCC.C CS
          HLH   6 nerErrRRdriNsafeeLrellPk.a 30 
                  +++Er RR ri +++ +L+el+P+ +
  CCG016545.1 205 SIAERVRRTRISDRIRKLQELVPNmD 230
                  689********************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.321199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-7202249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00114203232No hitNo description
Gene3DG3DSA:4.10.280.105.4E-7204249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MQPIPSGSRN TSAGGGSAGG GGGGGGGGGG GGGIARFRSA PATWIEALLG EEEEDPLKQS  60
QNLTQLLTSN TPSSRDSVPF NASSAAVEPG LFEPVGGFQR NNSSPTDILR SSGIGSDQGY  120
FSSYGNASNY EYMTPTMDVS PSDKRAREVE LQNPSARYPP PPSKREQTGP LRASSLIEME  180
MDKLLEDSVP CRVRAKRGCA THPRSIAERV RRTRISDRIR KLQELVPNMD KHYNFIVIML  240
ASVENLNNLF E
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031494.11e-169PREDICTED: transcription factor bHLH81-like isoform X1
SwissprotQ9C8P81e-59BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A2K1WRC81e-140A0A2K1WRC8_POPTR; Uncharacterized protein
STRINGPOPTR_0019s10900.11e-140(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.13e-51bHLH family protein