PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG016401.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 411aa MW: 46195.1 Da PI: 7.342

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG016401.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.5	5.6e-32	236	290	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ CCG016401.1 236 KTRIRWTQDLHEKFVECVNRLGGAEKATPKAILKLMDSDGLTIFHVKSHLQKYRI 290 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.361	233	293	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-28	234	291	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.17E-17	235	290	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-23	236	291	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-8	240	289	IPR001005	SANT/Myb domain
Pfam	PF14379	3.2E-20	320	367	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MNTRNIDCEE RVQQNHGVMI GDFVNLSSQY FGNQQIRNMA PRSQPAVMEA GFQQQNISPE 60 RSSSSIMSRF ESPASSFYAT ERSMRFPQYD CQVGSSFCSQ YSKSYDSHQS SGPNYSINLG 120 EQADRNFGLN STLESAGKPH FPYYNSFDKS DKGLSSSSGS KLPSQQHSKF LDNHGTDSLG 180 NHFSVPFQGN QDRQVGCNPY SSPFAGLSFN SLEGKQSPRF SLGGGPTSSG KDLSSKTRIR 240 WTQDLHEKFV ECVNRLGGAE KATPKAILKL MDSDGLTIFH VKSHLQKYRI AKYMPDPSEG 300 KAEKRNSIND VSQLDIKTGF QIREALQQQL DVQRRLHEQL EIQRNLQLRI EEQGKQLKMM 360 FDQQQKTTNS PLNKQNLDIT SPEEPPFSLE DLDVSLLEGS DNNTHFPSKI S

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MNTRNIDCEE RVQQNHGVMI GDFVNLSSQY FGNQQIRNMA PRSQPAVMEA GFQQQNISPE  60
RSSSSIMSRF ESPASSFYAT ERSMRFPQYD CQVGSSFCSQ YSKSYDSHQS SGPNYSINLG  120
EQADRNFGLN STLESAGKPH FPYYNSFDKS DKGLSSSSGS KLPSQQHSKF LDNHGTDSLG  180
NHFSVPFQGN QDRQVGCNPY SSPFAGLSFN SLEGKQSPRF SLGGGPTSSG KDLSSKTRIR  240
WTQDLHEKFV ECVNRLGGAE KATPKAILKL MDSDGLTIFH VKSHLQKYRI AKYMPDPSEG  300
KAEKRNSIND VSQLDIKTGF QIREALQQQL DVQRRLHEQL EIQRNLQLRI EEQGKQLKMM  360
FDQQQKTTNS PLNKQNLDIT SPEEPPFSLE DLDVSLLEGS DNNTHFPSKI S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-23	236	293	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-23	236	293	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-23	236	293	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-23	236	293	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147970	0.0	EF147970.1 Populus trichocarpa clone WS0126_F15 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011004821.1	0.0	PREDICTED: uncharacterized protein LOC105111211
TrEMBL	A0A2K2A4K2	0.0	A0A2K2A4K2_POPTR; Uncharacterized protein
STRING	POPTR_0006s20540.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3740	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	2e-79	G2-like family protein