PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG016350.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRF
Protein Properties Length: 610aa    MW: 66174.2 Da    PI: 8.471
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG016350.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.23.4e-24220263144
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                  d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e
  CCG016350.1 220 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVE 263
                  79***************************************998 PP
2QLQ60.45e-21151186237
          QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  +FT +Q+++L++Q+l+yKy+aan+P+P++Ll +i+k
  CCG016350.1 151 PFTQSQWMELEHQALIYKYIAANVPIPSNLLIPIRK 186
                  8*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009518.3E-12150186IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.6E-16151185IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.282151186IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.663220264IPR014977WRC domain
PfamPF088797.3E-21221263IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MDFGVQVGLD GFVGSDTSNS GFASLASSDP EAKQKLYGSG FLKQERPGNI DGDWRCSKLS  60
KTESMLLEQS NTSLLKSSSN FLFADGQQQQ QQQMLSFSYP RSAPSAERSS QNGTLPYFHL  120
TSSAHNRNTG YSSGIYNAAS MHGVLTETRW PFTQSQWMEL EHQALIYKYI AANVPIPSNL  180
LIPIRKALDS AGFPSFSAGF LRANTLPWGA FHMGFSSNTD PEPGRCRRTD GKKWRCSRDA  240
VADQKYCERH MNRGRHRSRK PVEGHSGHSA AAATTVKPAN GTSSSTSSSV VGLRSTVSDS  300
LTIAHNQQQA ASPSNLSASN TLSRMFLTKE NVGERTQDAT ALSMLRSNMD LKSKETPFFI  360
SKQQNSYGES LRNEFGLVTS DSLLNHSQKS SSLMSCRNFG SSQDLTDQES VSQHSLRQFM  420
DDWPKSQSDR SAVSWPELDQ QSERTQLSIS IPMAPADFMS STSSPNNEKV TLSPLRLSRE  480
FDPIQMGLGV GGGSGSIANE PNQRQANWIP ISWGTSVGGP LGEVLHNTNN NAAAECKTTS  540
SLNLMTYRWD NSPRIGSSPT GVLQKSAFAS LSNSSAGSSP RAENKTNEGG SLCNDLLGST  600
IVHSSSLPAM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4733681e-65AM473368.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X262323.6, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015778.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A2K1XNU70.0A0A2K1XNU7_POPTR; Uncharacterized protein
STRINGPOPTR_0014s01320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.14e-96growth-regulating factor 1