PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG016056.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 348aa    MW: 39268.5 Da    PI: 6.7934
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG016056.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.83.8e-13139190155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  CCG016056.1 139 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 190
                  79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.5E-14137194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-13137194No hitNo description
PROSITE profilePS5088815.402138189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-16138211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10139190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-10144195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MALEAAVFQQ DWFGHSSKEL YNFPAGNWSY DFVLDQNEDQ DKSCSSYFLE NQTETFLHGD  60
WNPLPPPDSM VPPYNDLQLT CSNIPSLSEA SINAANGLMS TTPTTDHHHH LGESSAMPAT  120
RVKRRRSRSK KNKEEIENQR MTHIAVERNR RKQMNEYLSV LRSLMPESYV QRGDQASIIG  180
GAINFVKELE QKLQVLGACK EMKEKPNGDD QQHVSSLPFS KFFIFPQYTT SSIHCESSAG  240
KDEKLMKSQS DIADIEVTMV ESHANLKIRS KRRPKQLLKV VSALHSMRLS VLHLNVSTVG  300
QIVLYSLSVK VEDDCKLSSV DEIATAVYQM LVSERLIATN VFAILSIV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139150RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9866730.0JX986673.1 Populus tomentosa helix-loop-helix protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023550.10.0PREDICTED: transcription factor bHLH94-like
TrEMBLB9I7Y80.0B9I7Y8_POPTR; BHLH family protein
STRINGPOPTR_0013s02680.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-72bHLH family protein