![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG015992.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 250aa MW: 27759.8 Da PI: 4.8642 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 8.9e-19 | 59 | 109 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g CCG015992.1 59 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 109 68*****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.7E-13 | 59 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-21 | 60 | 118 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-31 | 60 | 118 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-35 | 60 | 123 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.209 | 60 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 61 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.48E-32 | 61 | 119 | No hit | No description |
PRINTS | PR00367 | 2.6E-10 | 83 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence Send to blast |
MSDHHQQNSE TESSSTNSLS PASPSSPLSN STQSKKPLQD QDFSPSKKIK RIRDSNKHPV 60 YRGVRMRNWG KWVSEIREPR KKSRIWLGTF PTPEMAARAH DVAALSIKGN PAILNFPELA 120 NYLPRPASLA PRDVQAAAAK AAQMDKFDQK SETATTTSPS SSSTSSLTSL VSLMDLSSQE 180 EELCEIVELP SLETSYDELS NDFVYFDSID EWMYPPPWMQ SMENHCCGGG GGCACDDFTL 240 PNESTVLWDY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-19 | 58 | 121 | 12 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF155925 | 0.0 | EF155925.1 Populus trichocarpa TINY-like protein (TINYL6) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011004731.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 3-like | ||||
Swissprot | Q9LYD3 | 2e-75 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A9PL75 | 0.0 | A9PL75_POPTR; TINY-like protein | ||||
STRING | POPTR_0018s00270.1 | 1e-135 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11590.1 | 2e-65 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|