PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015933.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GeBP
Protein Properties Length: 348aa    MW: 38801.5 Da    PI: 9.6638
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015933.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57382.94.7e-2674169297
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiWg 97 
                  +f+r+wse Dei++LqGl++  +++g s  +d++ fy+ +++s+s  ++ksql+eK+rrL+kKf+  +++ a++g + s+ ++hd++ ++lsk++W 
  CCG015933.1  74 KFHRIWSEPDEISFLQGLLSS-SSQGLSFPKDLHFFYDRFSNSMSQPYTKSQLSEKMRRLRKKFRSTSSRlARNGFNYSLLSPHDRSLYDLSKQLWS 169
                  699****************98.889*9*99****************************************88999*********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.4E-2875169IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDSTPVPQHL PFKPSSSSSA SKLPIKRKTP DSLHHHHLLS PKLETSSTTT PTTTNPDAIS  60
TPATNSESKP PPFKFHRIWS EPDEISFLQG LLSSSSQGLS FPKDLHFFYD RFSNSMSQPY  120
TKSQLSEKMR RLRKKFRSTS SRLARNGFNY SLLSPHDRSL YDLSKQLWSP EFASSSPFGG  180
NKSTGSNSNS NFDGNVSSFR PDNVKRTKLD EGLGGVNGSF LPVFALPCEN VNVSNELNDL  240
ESLDLDEFDD GYVVKMREGN AGWEVDKAVS GRGGGCGSVA VKSVAKSVLN VFDECVKEVK  300
KVVLKERLDS SMEGKKEKDF QRRWREQRVA EFDVLALRLR LLLDNSAK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002792.10.0PREDICTED: uncharacterized protein LOC105109709
TrEMBLA0A2K2AS020.0A0A2K2AS02_POPTR; Uncharacterized protein
STRINGPOPTR_0004s09000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1654199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.15e-11DNA-binding storekeeper protein-related transcriptional regulator