PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG015917.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HB-other

Protein Properties

Length: 1702aa MW: 192496 Da PI: 5.5947

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG015917.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2e-19	27	82	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+e+r+eL++klgL++rq ++WF+ rR k+kk CCG015917.1 27 PKRQMKTPFQLETLEKAYATETYPSEEMRAELSEKLGLSDRQLQMWFCHRRLKDKK 82 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.4E-19	5	83	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.89E-17	16	83	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.248	23	83	IPR001356	Homeobox domain
SMART	SM00389	3.0E-19	25	87	IPR001356	Homeobox domain
Pfam	PF00046	4.6E-17	27	82	IPR001356	Homeobox domain
CDD	cd00086	1.43E-14	28	83	No hit	No description
SMART	SM00571	5.4E-22	512	571	IPR018501	DDT domain
PROSITE profile	PS50827	16.697	512	571	IPR018501	DDT domain
Pfam	PF02791	3.5E-17	513	568	IPR018501	DDT domain
Pfam	PF05066	1.8E-15	694	762	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15613	2.1E-13	1066	1138	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1702 aa Download sequence Send to blast
MDANSDEEQH NRSKNNVVSS NEGQSKPKRQ MKTPFQLETL EKAYATETYP SEEMRAELSE 60 KLGLSDRQLQ MWFCHRRLKD KKETPVKKQR NTAPLLESPL EDMRVGAENG SDYGSGSGSG 120 SSPLSESRKV ILDDGHTMRR YYDSSPQSVM ELRAIACVEA QLGEPLREDG PILGIEFDPL 180 PPDAFGTPIA SITEQQKRMG YSYEDKVYER HDAKSSKDHA GIRSDAHGLT QSPYHDSLVD 240 TLRGRASPFG AGQISRARLM SQQDKRVHAF SSPQRDDDYL LQRDTFANNR TGAQSNSHPI 300 MGPENPNVFS DAQTFHHDTE LRLERKRKIE EPRTVRDVEA YENRMRKELE KQDILRRKNE 360 ERMRKEMERH DRERRKEEER LMRERQREEE RLLREQKREL ERREKFMQKE YLRAEKRRQK 420 EELRREKEAV KRKAAMEKAT ARKIAKDSLD LIEDEQLELM ELAAASKGLA SIVNLNYDTL 480 QNLDSFRDLL ITFPSESVQL KKPFGFQPWL DSENIGNLLM VWRFFIAFAD VLGLWPFTLD 540 EFVQAFHDYD SRLLSELHVA LLKLIIKDIE DVARTPSIGL GINQYYTANP EGGHPQIVQG 600 AYTWGFDIRN WQQHLNPLTW PEILRQLALS AGFGPQLRKR NATWTGLGDI DEVKDCEDII 660 STIRNGSAAE NAFALMREKG LLLPRKSRHR LTPGTVKFAA FHVLSLEGSK GLTVLELADK 720 IQKSGLRDLT TSKTPEASIS VALTRDQKLF ERIAPSTYCV RAAFRKDPAD AEAILAAARK 780 KIRIFENGFL GGEVADDVER DEDSEGDVDE DPEVDDLATP LSANKSTVPS SKLNTLSVSG 840 KYKVGNDVSL TVQNESEKGL STFSLNGPKD VMTPIIIEQC VTHKDEGTNN GDGQNIEIDE 900 SKSERLNALV VLVGIANEGN SIRAVLEDRL EAANALKKQM WAEAQLDRSR LKEEFISKLD 960 FPSLTGGRVE TQVVSSAVEG SRSPLVLVDS KNKEASPSNA EDQKALAENV ENHLSSVLSE 1020 KALVVQDLSM NPDNISVQQH GYASKRSRSQ LKAYVTHLAE EMYIYRSLPL GQDRRRNRYW 1080 QFVASASRND PCSGRIFVEL HDGNWRVIDS EEAFDTLLSS LDTRGVRESH LRIMLQKIES 1140 SFKENVQRNL RSPNIVCQSG TTDENKKAET DSSNFPADID DPSSMFCVSS SDTFDTFSLF 1200 RIELGRNSAE KKGALKRYLD FQNWLWKDCF NSSTLCAMKF GKKRCEQLLD TCNLCFSSYL 1260 SEDTHCLSCH QTFKVDNKNF DFAEHEIQCK EKRFDPGNAR AFDSCSPLEI RLLTALLGSI 1320 EVSVPQEALE SFWMDIHRKD WGMKLIMSSS TEELLQRLTV FESAIKRERL SSNFETTKEL 1380 LGPSASSGSA ARDSASLGSV SLLPWMPKTS AAVALRLFEL DASIIYVKNE KPEPSTDKSV 1440 KVYMKLPSRY SDLKNEEVEI KDVKLEEHNK EEIVDLRGKR SNYKRGRGGH DQGLATKWQR 1500 RVPGLKSDTG RQSSSRGIQN LNQGPRQQGR KTNLQASSRG RRTVRKRRVE KTVAKEPLLG 1560 RMTNTVAAPM SYLSKKTAAR NSYVKSFRNL DDEDWSAKKG SLNAVGDDNS NSMEEAESDD 1620 DVEEEVYEQG NWEPGFKGTS NGWNRNSVEV SDDDGDASNG IAAMGDDDSE GDIEMSDGSD 1680 REANRVQNDE GLDYADSDEY SD

Sequence ? help Back to Top

Protein Sequence Length: 1702 aa Download sequence Send to blast

MDANSDEEQH NRSKNNVVSS NEGQSKPKRQ MKTPFQLETL EKAYATETYP SEEMRAELSE  60
KLGLSDRQLQ MWFCHRRLKD KKETPVKKQR NTAPLLESPL EDMRVGAENG SDYGSGSGSG  120
SSPLSESRKV ILDDGHTMRR YYDSSPQSVM ELRAIACVEA QLGEPLREDG PILGIEFDPL  180
PPDAFGTPIA SITEQQKRMG YSYEDKVYER HDAKSSKDHA GIRSDAHGLT QSPYHDSLVD  240
TLRGRASPFG AGQISRARLM SQQDKRVHAF SSPQRDDDYL LQRDTFANNR TGAQSNSHPI  300
MGPENPNVFS DAQTFHHDTE LRLERKRKIE EPRTVRDVEA YENRMRKELE KQDILRRKNE  360
ERMRKEMERH DRERRKEEER LMRERQREEE RLLREQKREL ERREKFMQKE YLRAEKRRQK  420
EELRREKEAV KRKAAMEKAT ARKIAKDSLD LIEDEQLELM ELAAASKGLA SIVNLNYDTL  480
QNLDSFRDLL ITFPSESVQL KKPFGFQPWL DSENIGNLLM VWRFFIAFAD VLGLWPFTLD  540
EFVQAFHDYD SRLLSELHVA LLKLIIKDIE DVARTPSIGL GINQYYTANP EGGHPQIVQG  600
AYTWGFDIRN WQQHLNPLTW PEILRQLALS AGFGPQLRKR NATWTGLGDI DEVKDCEDII  660
STIRNGSAAE NAFALMREKG LLLPRKSRHR LTPGTVKFAA FHVLSLEGSK GLTVLELADK  720
IQKSGLRDLT TSKTPEASIS VALTRDQKLF ERIAPSTYCV RAAFRKDPAD AEAILAAARK  780
KIRIFENGFL GGEVADDVER DEDSEGDVDE DPEVDDLATP LSANKSTVPS SKLNTLSVSG  840
KYKVGNDVSL TVQNESEKGL STFSLNGPKD VMTPIIIEQC VTHKDEGTNN GDGQNIEIDE  900
SKSERLNALV VLVGIANEGN SIRAVLEDRL EAANALKKQM WAEAQLDRSR LKEEFISKLD  960
FPSLTGGRVE TQVVSSAVEG SRSPLVLVDS KNKEASPSNA EDQKALAENV ENHLSSVLSE  1020
KALVVQDLSM NPDNISVQQH GYASKRSRSQ LKAYVTHLAE EMYIYRSLPL GQDRRRNRYW  1080
QFVASASRND PCSGRIFVEL HDGNWRVIDS EEAFDTLLSS LDTRGVRESH LRIMLQKIES  1140
SFKENVQRNL RSPNIVCQSG TTDENKKAET DSSNFPADID DPSSMFCVSS SDTFDTFSLF  1200
RIELGRNSAE KKGALKRYLD FQNWLWKDCF NSSTLCAMKF GKKRCEQLLD TCNLCFSSYL  1260
SEDTHCLSCH QTFKVDNKNF DFAEHEIQCK EKRFDPGNAR AFDSCSPLEI RLLTALLGSI  1320
EVSVPQEALE SFWMDIHRKD WGMKLIMSSS TEELLQRLTV FESAIKRERL SSNFETTKEL  1380
LGPSASSGSA ARDSASLGSV SLLPWMPKTS AAVALRLFEL DASIIYVKNE KPEPSTDKSV  1440
KVYMKLPSRY SDLKNEEVEI KDVKLEEHNK EEIVDLRGKR SNYKRGRGGH DQGLATKWQR  1500
RVPGLKSDTG RQSSSRGIQN LNQGPRQQGR KTNLQASSRG RRTVRKRRVE KTVAKEPLLG  1560
RMTNTVAAPM SYLSKKTAAR NSYVKSFRNL DDEDWSAKKG SLNAVGDDNS NSMEEAESDD  1620
DVEEEVYEQG NWEPGFKGTS NGWNRNSVEV SDDDGDASNG IAAMGDDDSE GDIEMSDGSD  1680
REANRVQNDE GLDYADSDEY SD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	82	RRLKDKKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011027775.1	0.0	PREDICTED: uncharacterized protein LOC105127984 isoform X2
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A2K1YG45	0.0	A0A2K1YG45_POPTR; Uncharacterized protein
STRING	POPTR_0004s04840.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1