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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG015881.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 254aa MW: 28670.8 Da PI: 6.1635 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 136.2 | 2.1e-42 | 4 | 137 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 ppG+rF Pt+eel+++yL++k++g + ++++i+ diy+++PwdLp+ ++ ++ ++w+fF++r++++a+g r++r t++gyWkatg+ CCG015881.1 4 PPGYRFFPTEEELISFYLHHKLDGGSedlnQVINQIIPVRDIYEHDPWDLPQfsgglHHIKDPEQWFFFIPRQESEARGGRPKRLTNTGYWKATGSPG 101 9***********************9955533333457777***********6577753334567********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v+s +++ +glk+t+vfy+grap+g+kt+W m+ey+ CCG015881.1 102 CVFS-NNRSIGLKRTMVFYSGRAPNGRKTEWKMNEYK 137 ****.9999***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-46 | 2 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.837 | 3 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.9E-22 | 4 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MVFPPGYRFF PTEEELISFY LHHKLDGGSE DLNQVINQII PVRDIYEHDP WDLPQFSGGL 60 HHIKDPEQWF FFIPRQESEA RGGRPKRLTN TGYWKATGSP GCVFSNNRSI GLKRTMVFYS 120 GRAPNGRKTE WKMNEYKALD QGKASSSTSA NPKLRHEYSL CRVYKNSKCV RAFDRRPVGL 180 EVIEPRTQPA SGGNELVASD QNHPTVENTS SPDNSCSGDQ GNPSGTGESS SMPMPIDNDM 240 WDVDLDWYYG AGQD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-34 | 1 | 166 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-34 | 1 | 166 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-34 | 1 | 166 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-34 | 1 | 166 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-34 | 1 | 166 | 18 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-34 | 1 | 166 | 18 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-34 | 1 | 166 | 18 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-34 | 1 | 166 | 18 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-34 | 1 | 166 | 18 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-34 | 1 | 166 | 18 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-34 | 1 | 166 | 18 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-34 | 1 | 166 | 18 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-34 | 1 | 166 | 15 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-34 | 1 | 166 | 15 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011004699.1 | 0.0 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 7e-67 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | B9IIS2 | 0.0 | B9IIS2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s07690.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 3e-69 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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