PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015880.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 256aa    MW: 29313.6 Da    PI: 6.1717
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015880.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1332.2e-4121353127
          NAM   3 pGfrFhPtdeelvveyLkkkvegkk...leleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                  pGfrF Pt+eelv++yL++k+e+++   l++ +  i+ +diy ++Pw+Lp+     ++++ +e++fF++r++++a+g r++r t++gyWkatg+  +v
  CCG015880.1   2 PGFRFYPTEEELVSFYLRNKLEARRedlLRVMDRlIPVLDIYGFNPWELPQfsgdLCHGDPEECFFFIPRQESEAHGGRPKRLTATGYWKATGSPGSV 99 
                  9**********************9977744434449999***********65675444567799********************************** PP

          NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                  +s+ +++ +g k+t+vfy+grap+g+ktdW m+ey+
  CCG015880.1 100 YSSkSNRCIGEKRTMVFYNGRAPNGQKTDWKMNEYK 135
                  *9855666***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100546.3691164IPR003441NAC domain
SuperFamilySSF1019418.5E-452164IPR003441NAC domain
PfamPF023652.2E-212135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MPGFRFYPTE EELVSFYLRN KLEARREDLL RVMDRLIPVL DIYGFNPWEL PQFSGDLCHG  60
DPEECFFFIP RQESEAHGGR PKRLTATGYW KATGSPGSVY SSKSNRCIGE KRTMVFYNGR  120
APNGQKTDWK MNEYKAIKEE EASSSSGAYP KLREEFSLCR VYKKSNFVRA FDRRPLGVEN  180
MVQMRAQAAP ADGATAFHRS PSSGEITCSH DSSTSGHHGQ PFQTGEISDM AIDNEPIWEW  240
EQLDQYWSQQ GHSDQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-31216619167NO APICAL MERISTEM PROTEIN
1ut4_B5e-31216619167NO APICAL MERISTEM PROTEIN
1ut7_A5e-31216619167NO APICAL MERISTEM PROTEIN
1ut7_B5e-31216619167NO APICAL MERISTEM PROTEIN
3swm_A5e-31216622170NAC domain-containing protein 19
3swm_B5e-31216622170NAC domain-containing protein 19
3swm_C5e-31216622170NAC domain-containing protein 19
3swm_D5e-31216622170NAC domain-containing protein 19
3swp_A5e-31216622170NAC domain-containing protein 19
3swp_B5e-31216622170NAC domain-containing protein 19
3swp_C5e-31216622170NAC domain-containing protein 19
3swp_D5e-31216622170NAC domain-containing protein 19
4dul_A5e-31216619167NAC domain-containing protein 19
4dul_B5e-31216619167NAC domain-containing protein 19
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166725e-75AC216672.1 Populus trichocarpa clone POP018-I12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004698.10.0PREDICTED: NAC domain-containing protein 90-like
SwissprotQ9FMR33e-76NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A2K1XCD10.0A0A2K1XCD1_POPTR; Uncharacterized protein
STRINGPOPTR_0016s07680.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.15e-77NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]