PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG015880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 256aa MW: 29313.6 Da PI: 6.1717 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 133 | 2.2e-41 | 2 | 135 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk...leleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrF Pt+eelv++yL++k+e+++ l++ + i+ +diy ++Pw+Lp+ ++++ +e++fF++r++++a+g r++r t++gyWkatg+ +v CCG015880.1 2 PGFRFYPTEEELVSFYLRNKLEARRedlLRVMDRlIPVLDIYGFNPWELPQfsgdLCHGDPEECFFFIPRQESEAHGGRPKRLTATGYWKATGSPGSV 99 9**********************9977744434449999***********65675444567799********************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 +s+ +++ +g k+t+vfy+grap+g+ktdW m+ey+ CCG015880.1 100 YSSkSNRCIGEKRTMVFYNGRAPNGQKTDWKMNEYK 135 *9855666***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 46.369 | 1 | 164 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.5E-45 | 2 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-21 | 2 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MPGFRFYPTE EELVSFYLRN KLEARREDLL RVMDRLIPVL DIYGFNPWEL PQFSGDLCHG 60 DPEECFFFIP RQESEAHGGR PKRLTATGYW KATGSPGSVY SSKSNRCIGE KRTMVFYNGR 120 APNGQKTDWK MNEYKAIKEE EASSSSGAYP KLREEFSLCR VYKKSNFVRA FDRRPLGVEN 180 MVQMRAQAAP ADGATAFHRS PSSGEITCSH DSSTSGHHGQ PFQTGEISDM AIDNEPIWEW 240 EQLDQYWSQQ GHSDQQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-31 | 2 | 166 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-31 | 2 | 166 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-31 | 2 | 166 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-31 | 2 | 166 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-31 | 2 | 166 | 22 | 170 | NAC domain-containing protein 19 |
3swm_B | 5e-31 | 2 | 166 | 22 | 170 | NAC domain-containing protein 19 |
3swm_C | 5e-31 | 2 | 166 | 22 | 170 | NAC domain-containing protein 19 |
3swm_D | 5e-31 | 2 | 166 | 22 | 170 | NAC domain-containing protein 19 |
3swp_A | 5e-31 | 2 | 166 | 22 | 170 | NAC domain-containing protein 19 |
3swp_B | 5e-31 | 2 | 166 | 22 | 170 | NAC domain-containing protein 19 |
3swp_C | 5e-31 | 2 | 166 | 22 | 170 | NAC domain-containing protein 19 |
3swp_D | 5e-31 | 2 | 166 | 22 | 170 | NAC domain-containing protein 19 |
4dul_A | 5e-31 | 2 | 166 | 19 | 167 | NAC domain-containing protein 19 |
4dul_B | 5e-31 | 2 | 166 | 19 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216672 | 5e-75 | AC216672.1 Populus trichocarpa clone POP018-I12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011004698.1 | 0.0 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 3e-76 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2K1XCD1 | 0.0 | A0A2K1XCD1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s07680.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 5e-77 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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