PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015845.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 301aa    MW: 32585.7 Da    PI: 10.459
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015845.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19144193356
          AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++ a+++l+g+
  CCG015845.1 144 YRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDSAARRLRGA 193
                  9*******.**********32....25**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.642143200IPR001471AP2/ERF domain
SMARTSM003802.8E-31143206IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-21143200IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-29143200IPR001471AP2/ERF domain
PRINTSPR003671.3E-10144155IPR001471AP2/ERF domain
CDDcd000183.50E-31144201No hitNo description
PfamPF008471.1E-13144192IPR001471AP2/ERF domain
PRINTSPR003671.3E-10166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MNNQKLLPIP FFPRPETYHL SEMFRLLTEN SSFCGSLLQP QNSLSSPFTS NHYDPTAYFP  60
VSTGISAIVS HPGIIKKPPE TPPVLDGIGA VVGQEVLFGT TNTKNSETSD FPSISQCIGS  120
KERKHERGAK RNCVNNGVPV QRTYRGVRKR PWGRWSAEIR DRIGRCRHWL GTFDTAEEAA  180
RAYDSAARRL RGAKARTNFE IPPVLPPLSP SPPSPSTACS SSSLNNAEVK RRTNNSNNRM  240
IGNGGRKCAV VTSVAHLFSN FEGKGTSGGG NVELDLKLAT GLGGHRDGNK SAASAPPSMV  300
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-161441991571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2149970.0AC214997.1 Populus trichocarpa clone POP013-F22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045670.10.0PREDICTED: ethylene-responsive transcription factor ERF084-like
TrEMBLB9GGA61e-178B9GGA6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s32050.11e-178(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130232631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.13e-23ERF family protein