PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015724.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 741aa    MW: 79563.2 Da    PI: 6.1466
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015724.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.4e-16469515455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  CCG015724.1 469 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 515
                  6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.00E-17461519No hitNo description
Gene3DG3DSA:4.10.280.102.4E-20462523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-20462526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349465514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13469515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17471520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MPLSELLYRM AKGKIDSSQE KDPSCSTDLS FVPENDFGEL MWENGQIQSS RARKIQPCST  60
LTCQNPKIRY KDIGSGTNIR TGKFGMIEST LNELPMSVPA VEMGVNQDDD MVPWLNYPLD  120
ESPQHDYCSE FLPELSGVTV NGHSSQSNFP SFGNKSFSQS VRDSRTVSVH DGLSLEQGDV  180
AKNSSAGDTE ANRPRTSASQ LCLSSSEHCQ TSFPYFRSRV SAKNGDSASN AAHHVVSVDS  240
IRAPTSGGGF PSIKMQKQVP AQSTTNSSLM NFSHFARPAA LAKANLQNFG MRAGTGISNM  300
ERMQNKDRGS IASSSNPAEC TPINSCSGLL KETSSHCLPV LMPPKVDAKP SEAKPAEGFV  360
PAERPEATIS EGDSKNDRNC RQNFCESAIK GVADVEKTKE PVAASSSVGS DNSVERPSDD  420
PTENLKRKHR DTEESEGPSE DVEEESVGAK KQAPARAGNG SKRNRAAEVH NLSERRRRDR  480
INEKMRALQE LIPNCNKVDK ASMLDEAIEY LKTLQLQVQI MSMGAGLYMP SMMLPPGMPH  540
MHAAHMGQFL PMGVGMGMRM GMGMGFGMSM PDVNGGSSGC PMYQVPPMHG PHFSGQPMSG  600
LSALHRMEGS SLQMFGLSGQ GFPVSFPCAP LMPMSGGPPL KTNMEPNACG VVGAMDNLDS  660
ATACSSHEAI QKINPQVMQN NVVNSSMNQT SSQCQATNEC FEQPALVQKN TQGSGVADNG  720
ALKSVGGNDN VPSSEAGEHL Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1473478ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039054.10.0PREDICTED: transcription factor PIF3-like isoform X2
TrEMBLU5G9H30.0U5G9H3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s00360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-72phytochrome interacting factor 3