PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG015572.3

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 517aa MW: 58403.4 Da PI: 8.3669

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG015572.3	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.6	4.8e-53	8	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lppGfrFhPtdeel+ +yL+kk++++++++ ++i++vdiyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk ++++ CCG015572.3 8 LPPGFRFHPTDEELILHYLRKKLASTPFPV-SIIADVDIYKFDPWDLPAKASLGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKIIMAStma 104 79**************************.89***********999999************************************9999 PP NAM 96 ......kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e++g+kk Lvfykg+ pkg+kt+W+mheyrl CCG015572.3 105 pggvvgGQENIGVKKALVFYKGKPPKGVKTNWIMHEYRL 143 9988887888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.59E-64	5	176	IPR003441	NAC domain
PROSITE profile	PS51005	61.493	8	176	IPR003441	NAC domain
Pfam	PF02365	3.0E-27	9	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MKNPQSGLPP GFRFHPTDEE LILHYLRKKL ASTPFPVSII ADVDIYKFDP WDLPAKASLG 60 EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKIIMA STMAPGGVVG GQENIGVKKA 120 LVFYKGKPPK GVKTNWIMHE YRLADTPTRN NNNKPMKPKD SSMRLDDWVL CRIYKKSQAL 180 ISSPRALISS EHDQEEEEEH QQQQQQFVQE NLLPTSNKNT LMSQQSCSFS NLLDAMDSSM 240 WSSFLADNPF NPTGFESNPT LNSSTATQLD QPFFSNSNCA SNSNSTSSCS FLQKLPQLNT 300 SMPNVQENKL KRQLPHIDED LLHPSKKFMN SCSFSNTNNN TQTDMGQYNF LSQPFLDQQL 360 LLSPHLQFLE TQVFHTSHHH GVDPSLDYPP PPTQVTRVSH EQTETHHSFR PHMPSFNHQH 420 THQSGSASGL DLYNKPSFKV YSKAQPEFHL TIRGGKVILA PSNPSDEFQN WYKDEKYSTR 480 VKDSEGCPAF ALVNKATGQA MKHSIGEAHP VRNSLRS

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MKNPQSGLPP GFRFHPTDEE LILHYLRKKL ASTPFPVSII ADVDIYKFDP WDLPAKASLG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKIIMA STMAPGGVVG GQENIGVKKA  120
LVFYKGKPPK GVKTNWIMHE YRLADTPTRN NNNKPMKPKD SSMRLDDWVL CRIYKKSQAL  180
ISSPRALISS EHDQEEEEEH QQQQQQFVQE NLLPTSNKNT LMSQQSCSFS NLLDAMDSSM  240
WSSFLADNPF NPTGFESNPT LNSSTATQLD QPFFSNSNCA SNSNSTSSCS FLQKLPQLNT  300
SMPNVQENKL KRQLPHIDED LLHPSKKFMN SCSFSNTNNN TQTDMGQYNF LSQPFLDQQL  360
LLSPHLQFLE TQVFHTSHHH GVDPSLDYPP PPTQVTRVSH EQTETHHSFR PHMPSFNHQH  420
THQSGSASGL DLYNKPSFKV YSKAQPEFHL TIRGGKVILA PSNPSDEFQN WYKDEKYSTR  480
VKDSEGCPAF ALVNKATGQA MKHSIGEAHP VRNSLRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-71	5	176	14	165	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-71	5	176	14	165	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-71	5	176	14	165	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-71	5	176	14	165	NO APICAL MERISTEM PROTEIN
4dul_A	8e-71	5	176	14	165	NAC domain-containing protein 19
4dul_B	8e-71	5	176	14	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216771	0.0	AC216771.1 Populus trichocarpa clone POP051-N07, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011034424.1	0.0	PREDICTED: NAC transcription factor 29-like
Swissprot	Q84TD6	1e-115	NAC47_ARATH; NAC transcription factor 47
TrEMBL	A0A2K1Y1C6	0.0	A0A2K1Y1C6_POPTR; Uncharacterized protein
STRING	POPTR_0013s05080.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6621	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	1e-109	NAC domain containing protein 47

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]