PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG015571.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 388aa MW: 44122.1 Da PI: 6.013

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG015571.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	183.3	5.7e-57	16	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lp+GfrFhPtdee++++yL++kv ++ + + +i evd++k+ePwdLpkk++ +e+ewyfF++rd+ky+tg r+nrat+sgyWkatgkdke++++k+ CCG015571.1 16 LPAGFRFHPTDEEIISHYLTEKVMKSGFCA-IAIGEVDLNKCEPWDLPKKANMGENEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIHKEKNC 112 799**********************888.78***********99999*************************************9* PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfy+grapkgekt+Wvmheyrle CCG015571.1 113 LVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 143 *****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.29E-62	12	167	IPR003441	NAC domain
PROSITE profile	PS51005	58.594	16	167	IPR003441	NAC domain
Pfam	PF02365	7.8E-30	17	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MEEAVVVNKG DDQIHLPAGF RFHPTDEEII SHYLTEKVMK SGFCAIAIGE VDLNKCEPWD 60 LPKKANMGEN EWYFFCQRDR KYPTGMRTNR ATESGYWKAT GKDKEIHKEK NCLVGMKKTL 120 VFYRGRAPKG EKTNWVMHEY RLEGKFSYYS LPKVARDEWV VCRIFHKSTG MKKTSIHDLL 180 RMNSFGDDFL DYSSLPPLMD PPNYTSSFGD ADNNEFKAMM TSRSSDGNYF SNTSMLNNQS 240 FVQPPNTNYQ TPNSSFHLQT PASNPLYTIQ TNHNMPVYLQ KGKGTNSFPN FQNSTFGNND 300 QTLLRALASG NNYGEASDQL EKQCKVEQFS SNQSMVSLSQ DTGLSTDVNT TTEISSVVSK 360 QEIGSHNEFY ESLEDPLAGP IADDAWYY

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MEEAVVVNKG DDQIHLPAGF RFHPTDEEII SHYLTEKVMK SGFCAIAIGE VDLNKCEPWD  60
LPKKANMGEN EWYFFCQRDR KYPTGMRTNR ATESGYWKAT GKDKEIHKEK NCLVGMKKTL  120
VFYRGRAPKG EKTNWVMHEY RLEGKFSYYS LPKVARDEWV VCRIFHKSTG MKKTSIHDLL  180
RMNSFGDDFL DYSSLPPLMD PPNYTSSFGD ADNNEFKAMM TSRSSDGNYF SNTSMLNNQS  240
FVQPPNTNYQ TPNSSFHLQT PASNPLYTIQ TNHNMPVYLQ KGKGTNSFPN FQNSTFGNND  300
QTLLRALASG NNYGEASDQL EKQCKVEQFS SNQSMVSLSQ DTGLSTDVNT TTEISSVVSK  360
QEIGSHNEFY ESLEDPLAGP IADDAWYY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-52	13	173	17	174	NAC domain-containing protein 19
3swm_B	1e-52	13	173	17	174	NAC domain-containing protein 19
3swm_C	1e-52	13	173	17	174	NAC domain-containing protein 19
3swm_D	1e-52	13	173	17	174	NAC domain-containing protein 19
3swp_A	1e-52	13	173	17	174	NAC domain-containing protein 19
3swp_B	1e-52	13	173	17	174	NAC domain-containing protein 19
3swp_C	1e-52	13	173	17	174	NAC domain-containing protein 19
3swp_D	1e-52	13	173	17	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011034422.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FK44	1e-113	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A2K1Y1E0	0.0	A0A2K1Y1E0_POPTR; Uncharacterized protein
STRING	POPTR_0013s05110.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	1e-116	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]