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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
CCG015449.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
C2H2 |
| Protein Properties |
Length: 345aa MW: 39591.7 Da PI: 6.2814 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| CCG015449.1 | genome | LZU | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12.4 | 0.00047 | 83 | 105 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23
C+ Cgk+F + L++H H
CCG015449.1 83 CSfeGCGKTFIDAGALRKHSHIH 105
77779**************7766 PP
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| 2 | zf-C2H2 | 22.3 | 3.5e-07 | 110 | 134 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
y+C+ Cgk Fs nL++H++tH
CCG015449.1 110 YVCHyeGCGKAFSLDFNLRSHMKTH 134
9***********************9 PP
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| 3 | zf-C2H2 | 15.4 | 5.2e-05 | 140 | 164 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
+ Cp Cgk++ + + Lk+Hi +H
CCG015449.1 140 HICPysECGKRYAHEYKLKNHIASH 164
68*********************96 PP
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| 4 | zf-C2H2 | 13.2 | 0.00027 | 203 | 228 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23
y Cp C k + + + Lk H+r+ H
CCG015449.1 203 YICPyeGCEKDYIHEYKLKLHLRReH 228
89**********************99 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:3.30.160.60 | 6.3E-14 | 76 | 106 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE profile | PS50157 | 10.783 | 81 | 110 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.0037 | 81 | 105 | IPR015880 | Zinc finger, C2H2-like |
| SuperFamily | SSF57667 | 1.32E-8 | 83 | 134 | No hit | No description |
| PROSITE pattern | PS00028 | 0 | 83 | 105 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 9.8E-14 | 107 | 133 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE profile | PS50157 | 12.778 | 110 | 139 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 7.2E-4 | 110 | 134 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 112 | 134 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 3.04E-9 | 120 | 169 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 6.7E-8 | 134 | 166 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE profile | PS50157 | 10.949 | 140 | 169 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.035 | 140 | 164 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 142 | 165 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 4.6E-9 | 198 | 225 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 4.68E-5 | 198 | 226 | No hit | No description |
| PROSITE profile | PS50157 | 8.559 | 203 | 233 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.016 | 203 | 228 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 205 | 228 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 345 aa
Download sequence Send
to blast |
MEAHQHHQFT QNIFERRPII KSKTPAVKWI KEWVPQDVVA TGGKCSLFKW VAENHLNVLK 60
EKAKEPPAPE PEPEPTTEVL FLCSFEGCGK TFIDAGALRK HSHIHGERQY VCHYEGCGKA 120
FSLDFNLRSH MKTHSQENYH ICPYSECGKR YAHEYKLKNH IASHHEKNPT PDVVRYATPP 180
ERILKNPKPP SGVYGSASSD RPYICPYEGC EKDYIHEYKL KLHLRREHPD HMADENAENA 240
NSNADNEMDE ASDQDAYGGK RVNGKSQKHS RPKPNLKTPP VKIRQRKGSS SSPATLNVVK 300
KPWPVKDDTY EEDSEETEEE DHDNAEDGWR YGGHEDDDEE TEDED
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| Functional Description ? help
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| Source |
Description |
| UniProt | Dual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EF148507 | 0.0 | EF148507.1 Populus trichocarpa x Populus deltoides clone WS0131_N16 unknown mRNA. |
| Publications
? help Back to Top |
- Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
DNA Res., 2001. 8(6): p. 285-90
[PMID:11853315] - Li T,Wu XY,Li H,Song JH,Liu JY
A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
Mol Plant, 2016. 9(5): p. 650-661
[PMID:26961720] - Wu XY,Li T
A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
Front Plant Sci, 2017. 8: p. 323
[PMID:28348572]
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