PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG015339.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 361aa MW: 40335.9 Da PI: 4.3742

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG015339.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.4	1.6e-10	287	327	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ ++P+ +K++ +++Le+Av+Y+k Lq CCG015339.1 287 RKRRERINERLKILQNIVPNG-----TKVDISTMLEEAVHYVKFLQ 327 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.665	277	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.13E-13	279	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.3E-12	282	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-11	283	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.46E-11	286	331	No hit	No description
Pfam	PF00010	7.1E-8	287	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MNMQTMGDFP DVEWDFSRMF SMEEPDFSPE LLDQCSFSQE NDEGLQFTIP PAFFPTPEAN 60 VSMAGNESLF YSWNALNPNL HFDSQESGNN SNCSSGVFLP SSSLESYFFN DSNRIQATND 120 NSMSMDISLM DEKTIGLLTP FFPEITMAET AWMNGDMSSD KIGDLDDNLQ PAANTVLAKG 180 LQLKRKLDVP ESNTLDDMKK KPRITRNVQK RKNSVQSKKN QRSTPKISNE EEESNPGPDG 240 QSSSSCSSED DNASKDSDSK VSEVLSSSGK TRASRGAATD PQSLYARKRR ERINERLKIL 300 QNIVPNGTKV DISTMLEEAV HYVKFLQLQI KLLSSDDLWM YAPLAYSGID IGLDQKLSML 360 L

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MNMQTMGDFP DVEWDFSRMF SMEEPDFSPE LLDQCSFSQE NDEGLQFTIP PAFFPTPEAN  60
VSMAGNESLF YSWNALNPNL HFDSQESGNN SNCSSGVFLP SSSLESYFFN DSNRIQATND  120
NSMSMDISLM DEKTIGLLTP FFPEITMAET AWMNGDMSSD KIGDLDDNLQ PAANTVLAKG  180
LQLKRKLDVP ESNTLDDMKK KPRITRNVQK RKNSVQSKKN QRSTPKISNE EEESNPGPDG  240
QSSSSCSSED DNASKDSDSK VSEVLSSSGK TRASRGAATD PQSLYARKRR ERINERLKIL  300
QNIVPNGTKV DISTMLEEAV HYVKFLQLQI KLLSSDDLWM YAPLAYSGID IGLDQKLSML  360
L

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010999863.1	0.0	PREDICTED: transcription factor bHLH85-like
TrEMBL	A0A2K1XNY8	0.0	A0A2K1XNY8_POPTR; Uncharacterized protein
STRING	POPTR_0014s01730.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF807	33	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33880.1	8e-55	ROOT HAIR DEFECTIVE 6-LIKE 2