PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015330.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 807aa    MW: 92252.1 Da    PI: 6.7659
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015330.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR197.11.9e-30101193291
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  fYn+YA++vGFs+r+s s++s+r+g i++r fvC keg+r +++k    +++ +r+raetr+gCka+l+vk ++ g+w+v+ ++ eHnHel+p
  CCG015330.1 101 FYNSYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRIDKDKParsDVRVKRPRAETRVGCKAMLVVKIQDCGRWVVSAFVREHNHELVP 193
                  9***************************************999988777889999************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.2E-29101193IPR004330FAR1 DNA binding domain
PfamPF105511.4E-31314406IPR018289MULE transposase domain
PfamPF044341.7E-11582628IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.053594630IPR007527Zinc finger, SWIM-type
SMARTSM005756.1E-8605632IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MIMELEPLTM GNEVIEFDMM GLGDDTVDDI QHQSVDVGVD EVEEEEAGDG EVEGNHFLLN  60
FYDPQSSHNS ISGQVYIPQG DTNLEPYEGM EFESEEAAKA FYNSYARRVG FSTRVSMSRR  120
SRRDGAIIQR SFVCAKEGFR IDKDKPARSD VRVKRPRAET RVGCKAMLVV KIQDCGRWVV  180
SAFVREHNHE LVPPDKVHCL RSHRHVSGSA KSLIDTLQCA GIGPSGIMSA LIKEYGGISN  240
VGFTERDCRN YMRSSRQRTL GGDTQHLLDY LRNKQAENSA FFYAVQGDED QCMSNIFWAD  300
AKARANYTYF GDTVTFDTTY RSNRYRLPFA PFTGVNHHGQ PVLFGCALLV NESEASFLWL  360
FKTWLMAMSE RPPGSITTDH DRVICLAVNQ VFPETRHRIC KWHIFKEFQE KLSHVLSEHP  420
NFEAELHKCV NLTESVEEFE SCWLSLLNRY NLREHEWLQA VYTDRRQWVP AYLRDTFFAE  480
MSITQRSDSI NSYFDGYINA STTLQLFVKQ YEKALESRYE KEVKADYDSI NTAPVLKTPS  540
PMEKQVAELY SRKLFLKFQE ELVETLTFLA TKVGDDGAIT TYRVAKFGES HKAYTVSFTV  600
REMKASCSCL MFEFSGLLCR HILTVFRVTN VLTLPSHYVL KRWTRNAKSG VILEEHACDF  660
LSSSRESLTF RYSNLRHEAL KYVDNGTQSL EIYNVSMDAL QEAANKVALA RKNGGKVAIA  720
NRAGREEYPP QGSQANNNNH NQQQGSEQPA SGDDQDKKIQ KLHHKLDRAR QKCEAYRANL  780
LSVLKDIEEQ KLQLSIKVQN IKLGMKD
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004404.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K1YKC90.0A0A2K1YKC9_POPTR; Uncharacterized protein
STRINGPOPTR_0011s14880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]