PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG015316.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Trihelix | ||||||||
Protein Properties | Length: 809aa MW: 88363.8 Da PI: 5.4176 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 95.9 | 3.6e-30 | 105 | 189 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe++aL+++r+em+ ++r++ lk+plWe+vs+k++e g++r++k+Ckek+en++k+yk++keg+ +r++++s +++f+qlea CCG015316.1 105 RWPRQETHALLQIRSEMDAAFRDATLKGPLWEDVSRKLAEMGYKRNAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFSQLEA 189 8*********************************************************************866665..*******85 PP | |||||||
2 | trihelix | 105.7 | 3.2e-33 | 530 | 615 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e++++++ k+plWee+s m++ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+ +tcpyf++l+a CCG015316.1 530 RWPKPEVLALIKLRSGLETKYQEAGPKGPLWEEISTGMQRMGYKRSAKRCKEKWENINKYFKKVKESNKNR-PEDAKTCPYFHELDA 615 8********************************************************************98.99999********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.22 | 102 | 164 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 4.1E-21 | 104 | 190 | No hit | No description |
CDD | cd12203 | 7.28E-28 | 104 | 169 | No hit | No description |
PROSITE profile | PS50090 | 6.62 | 104 | 162 | IPR017877 | Myb-like domain |
PROSITE profile | PS50090 | 7.004 | 523 | 587 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.017 | 527 | 589 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 7.0E-23 | 529 | 616 | No hit | No description |
CDD | cd12203 | 3.14E-30 | 530 | 594 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 809 aa Download sequence Send to blast |
MQQGGGERGS SQSQYGVPHQ QQQQQEQGDV PITTPSSAAL ATHMQQQVVE EASPISSRPP 60 ATAATTSGVM NLDEFMRLSG SGGAEEDIVA GEDADRTGGI SSGNRWPRQE THALLQIRSE 120 MDAAFRDATL KGPLWEDVSR KLAEMGYKRN AKKCKEKFEN VHKYYKRTKE GRAGRQDGKS 180 YRFFSQLEAL HNTTGSGGAS ASIINVSGAA SKQIFTTTTS SLDVAPVSVG IPMPPSSSVR 240 IPPPSSRVLQ PASNIGSMFP PDLGATVAAA AAGAGPVGIS FSSNESSSSP SSEDDDDDED 300 EELLGGQPSA TAAGTSRKRK RASLSSAKGE THRMMEFFEG LMKQLMQKQE AMQQRFLEAI 360 EKREQDRMIR DEARRRQEMA RLSREDEIMA EERAISASRD AAIVALLQKI TGQTIHLPTP 420 VSMAPPFSLP PPPPPPAEPQ PVQVTPLFTV STQPPPSQLK HMPQSHVTPQ QNIQHPQPLP 480 QQQHHHHQQG HRQHQLPISS DIVMAVPEQQ IIPQEIGSGG GSGSEPASSR WPKPEVLALI 540 KLRSGLETKY QEAGPKGPLW EEISTGMQRM GYKRSAKRCK EKWENINKYF KKVKESNKNR 600 PEDAKTCPYF HELDALYRKK ILGGSGGGGG STSTSGFDSQ SRPQERQQQQ QQESLQLDPM 660 PHPMQQPPQQ TEATESQNKN GAGGDVQVSN IGLPGNLGEG NGGAAKKPED IVKELKKQQG 720 TQQQQQQQQQ QQQLMVDGYD KMEGGDSENV NEDEYDDEDE GDDDDEEEEE EGLQEERKMA 780 YKIEFQRQNT SSAANGGGTG APSFLAMVQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 155 | KRNAKKCKE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011004380.1 | 0.0 | PREDICTED: trihelix transcription factor GTL1-like isoform X1 | ||||
TrEMBL | G8G9Q9 | 0.0 | G8G9Q9_POPCN; GTL1 | ||||
STRING | POPTR_0001s45870.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33240.1 | 4e-50 | GT-2-like 1 |