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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG015306.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 337aa MW: 36029.9 Da PI: 5.5888 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58 | 2.3e-18 | 21 | 71 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d ++ r +lg+f+tae+Aa+a++ a+++l+g+ CCG015306.1 21 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDDAARALRGA 71 689******.7*********....4456*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.31 | 21 | 78 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-12 | 21 | 70 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-28 | 21 | 78 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.88E-16 | 21 | 78 | No hit | No description |
SMART | SM00380 | 5.5E-34 | 21 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 22 | 33 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.34E-20 | 22 | 79 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-7 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MGAPSGGLRG RRKSSTRGHH RFVGVRQRPS GRWVAEIKDS LQKVRLWLGT FDTAEDAARA 60 YDDAARALRG AHARTNFELP QLAPNSGPGG RASLSEVEPF SFEDVCGTGT EAEGILGALK 120 AKLLDGKGLR VLPSANCSSS VQPDMIANIS HKNNISKREL ASTASITDGV GTVIAIQDPG 180 SSGSGKGDLV LDLDHGDMMA GHVAAAQWSQ PCQTTATANM EWPSEPASYE VSWATQMNHI 240 YDQAALFTSS STIATSAWPL SATTQPSFDS TYPYPCATEL FMNKISRTTT TNTPSPQIDG 300 PTEGVWSDEQ QFLHCDNSGW TGANSSSWDP FLSYPQC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-14 | 19 | 77 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011004420.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor TINY-like | ||||
TrEMBL | B9I0P3 | 0.0 | B9I0P3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s15190.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11333 | 30 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 4e-15 | related to AP2 11 |