PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG015305.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 1171aa MW: 129534 Da PI: 5.0138

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG015305.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.6	4.8e-53	482	613	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lp GfrF+Ptdeel+++yL+ k++g++ e+ evi+e+di+k+ePwdLp + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++s+ CCG015305.2 482 LPLGFRFRPTDEELISHYLRLKINGRDSEV-EVIPEIDICKLEPWDLPglSVIKTDDPEWFFFCPRDRKYPNGHRSNRATNAGYWKATGKDRTIKSRk 578 699**********************999.99***********6447888899**********************************97 PP NAM 96 ...kgelvglkktLvfykgrapkgektdWvmheyr 127 +++l+g+kktLvfy+grapkge+t+W+mheyr CCG015305.2 579 sagNTTLIGMKKTLVFYRGRAPKGERTNWIMHEYR 613 7766677*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00892	1.3E-12	230	368	IPR000620	EamA domain
SuperFamily	SSF103481	6.02E-6	269	373	No hit	No description
PROSITE profile	PS51292	16.678	397	457	IPR011016	Zinc finger, RING-CH-type
SuperFamily	SSF57850	7.59E-10	405	453	No hit	No description
SMART	SM00744	6.2E-11	406	451	IPR011016	Zinc finger, RING-CH-type
Gene3D	G3DSA:3.30.40.10	3.3E-12	406	452	IPR013083	Zinc finger, RING/FYVE/PHD-type
Pfam	PF12906	5.8E-9	406	450	IPR011016	Zinc finger, RING-CH-type
SuperFamily	SSF101941	3.27E-61	473	637	IPR003441	NAC domain
PROSITE profile	PS51005	57.406	482	637	IPR003441	NAC domain
Pfam	PF02365	2.8E-27	483	613	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1171 aa Download sequence Send to blast
MEYKDDRKLV SKERDKRGVT LLPSRALNSM ADCNEWKPFI AMITVDFSFS IVNILLKKVL 60 DEGINHLVLI TYRLSISALF LGPIGYFWER GSRPKLTFRI SCYLFLSAIG ITDTILLPSR 120 HXXXXXXXXX XXXLLGIQYT SATFSCAFIN MVPVVTFIMA LPFKMETVHI KSNSGKAKTL 180 GSLVCIAGAI LLTVYRGTPL FNHSPNQAVT RAMDHGLKLS LAKRAERWTF GCIALLAGTL 240 LWSSWFVLQS HIGRRYPCQY SSTAIMSFFG AIQAAVLCFS TKRSLSIWVL KGKIEIITVL 300 YAGMIGSGLC FVGMSWCVKK RGPVFTAAFS PLVQIMAAML DVPVLHEELY LGSLLGSIFV 360 IMGLYILLWG KNKEMQNHAT RVAQEAEEFK EQEPPVQVIT VSFDSRVCQQ EKEEVLIDLG 420 CKCKGGLAKA HRTCIDTWFS TRGSNKCEIC QAVAVNVSPP ESQPTNKEKE DNMVAVVPVD 480 SLPLGFRFRP TDEELISHYL RLKINGRDSE VEVIPEIDIC KLEPWDLPGL SVIKTDDPEW 540 FFFCPRDRKY PNGHRSNRAT NAGYWKATGK DRTIKSRKSA GNTTLIGMKK TLVFYRGRAP 600 KGERTNWIMH EYRPTEKDLN GTGPGQGAFV LFRLFRKPEE RPSIVKYDEM EQIEYSPTAA 660 KSSPDDASSD LVQETATSEM SSGRQPEDIK MWSAESDNTT SNAVVPIDSC SNSRATSDVE 720 DQVPEATAVE AYLPLDEISP LHEPVSDELD CKIFSPMRSQ IPADLGCYMD SPYASDFGNN 780 QNGFSFQGGT SEQDVSFIEL LDDYINNHGD YSGEETSSQN TLGVGSETQL FGQVPPGNFH 840 VKDHGIYNGM AQELHASHMG APVWPGDQFD SYELLQMQTA FGTCQAPTSF SDGEIGRGNI 900 GHFGNNFVGQ DAPFANSAIS SFDVYNTMEE PTSQMTSVDY DSGVSGTGIK IRTRQPQVRR 960 HSDNLVDQGS APRRIRLLVE RSVESVGNCK VNDATHVDDE DEVQSAVTEA TGDAGKQAST 1020 VDEDEDEVQS AVTEATGDAE KQASTDDEDE DEDEVQSAVT EATGDAEKQA SAVDDLQNES 1080 TLAISKINKE ITEESSSNLR LRVKREGDSG SRQIALPASP AAPPAHHGHK SLSIYVSIFL 1140 LLILFIAFAG MWRSRKTVKF LWIQDGASDN L

Sequence ? help Back to Top

Protein Sequence Length: 1171 aa Download sequence Send to blast

MEYKDDRKLV SKERDKRGVT LLPSRALNSM ADCNEWKPFI AMITVDFSFS IVNILLKKVL  60
DEGINHLVLI TYRLSISALF LGPIGYFWER GSRPKLTFRI SCYLFLSAIG ITDTILLPSR  120
HXXXXXXXXX XXXLLGIQYT SATFSCAFIN MVPVVTFIMA LPFKMETVHI KSNSGKAKTL  180
GSLVCIAGAI LLTVYRGTPL FNHSPNQAVT RAMDHGLKLS LAKRAERWTF GCIALLAGTL  240
LWSSWFVLQS HIGRRYPCQY SSTAIMSFFG AIQAAVLCFS TKRSLSIWVL KGKIEIITVL  300
YAGMIGSGLC FVGMSWCVKK RGPVFTAAFS PLVQIMAAML DVPVLHEELY LGSLLGSIFV  360
IMGLYILLWG KNKEMQNHAT RVAQEAEEFK EQEPPVQVIT VSFDSRVCQQ EKEEVLIDLG  420
CKCKGGLAKA HRTCIDTWFS TRGSNKCEIC QAVAVNVSPP ESQPTNKEKE DNMVAVVPVD  480
SLPLGFRFRP TDEELISHYL RLKINGRDSE VEVIPEIDIC KLEPWDLPGL SVIKTDDPEW  540
FFFCPRDRKY PNGHRSNRAT NAGYWKATGK DRTIKSRKSA GNTTLIGMKK TLVFYRGRAP  600
KGERTNWIMH EYRPTEKDLN GTGPGQGAFV LFRLFRKPEE RPSIVKYDEM EQIEYSPTAA  660
KSSPDDASSD LVQETATSEM SSGRQPEDIK MWSAESDNTT SNAVVPIDSC SNSRATSDVE  720
DQVPEATAVE AYLPLDEISP LHEPVSDELD CKIFSPMRSQ IPADLGCYMD SPYASDFGNN  780
QNGFSFQGGT SEQDVSFIEL LDDYINNHGD YSGEETSSQN TLGVGSETQL FGQVPPGNFH  840
VKDHGIYNGM AQELHASHMG APVWPGDQFD SYELLQMQTA FGTCQAPTSF SDGEIGRGNI  900
GHFGNNFVGQ DAPFANSAIS SFDVYNTMEE PTSQMTSVDY DSGVSGTGIK IRTRQPQVRR  960
HSDNLVDQGS APRRIRLLVE RSVESVGNCK VNDATHVDDE DEVQSAVTEA TGDAGKQAST  1020
VDEDEDEVQS AVTEATGDAE KQASTDDEDE DEDEVQSAVT EATGDAEKQA SAVDDLQNES  1080
TLAISKINKE ITEESSSNLR LRVKREGDSG SRQIALPASP AAPPAHHGHK SLSIYVSIFL  1140
LLILFIAFAG MWRSRKTVKF LWIQDGASDN L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-43	481	613	14	139	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149298	1e-127	AC149298.1 Populus trichocarpa clone Pop1-021H24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011004350.1	0.0	PREDICTED: uncharacterized protein LOC105110869 isoform X1
TrEMBL	A0A2I4KK92	0.0	A0A2I4KK92_POPTR; NAC family protein
STRING	POPTR_0011s15230.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13625	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.2	1e-120	NAC 014