PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG015155.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 256aa MW: 29691.1 Da PI: 5.7479 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 141.2 | 6e-44 | 3 | 135 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk...leleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppGfrF Pt+eelv++yL++k+e+++ l++ + i+ +diy ++Pw+Lp ++++ +ew+fF++r++++a+g r++r t+sgyWkatg+ +v+s CCG015155.1 3 PPGFRFYPTEEELVSFYLHNKLEARRedlLRVMDRlIPVLDIYGFNPWELPrDLCNGDPEEWFFFIRRQESEARGGRPKRLTSSGYWKATGSPSPVYS 100 9***********************9977744434449999***********445666777*************************************9 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ +g k+t+vfy+grap+g+kt+W m+ey++ CCG015155.1 101 SnSNRSIGEKRTMVFYQGRAPRGRKTEWKMNEYKA 135 966778***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 49.682 | 2 | 164 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.85E-47 | 2 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-22 | 3 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MIPPGFRFYP TEEELVSFYL HNKLEARRED LLRVMDRLIP VLDIYGFNPW ELPRDLCNGD 60 PEEWFFFIRR QESEARGGRP KRLTSSGYWK ATGSPSPVYS SNSNRSIGEK RTMVFYQGRA 120 PRGRKTEWKM NEYKAMEEEE AASYSNGGHP RLRQEFSLCR VYKKAKFVRA FDRRPSGVEM 180 GTEMRAQATP GNEVTSSHQN PSTAETPCSH DILSLGDHGQ TFQTGESSYM AGIDTDNEPI 240 WDWEQLEWCY SDRDNI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-34 | 2 | 164 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-34 | 2 | 164 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-34 | 2 | 164 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-34 | 2 | 164 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-33 | 2 | 164 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-33 | 2 | 164 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-33 | 2 | 164 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-33 | 2 | 164 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-33 | 2 | 164 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-33 | 2 | 164 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-33 | 2 | 164 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-33 | 2 | 164 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 8e-34 | 2 | 164 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 8e-34 | 2 | 164 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216672 | 1e-145 | AC216672.1 Populus trichocarpa clone POP018-I12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011004197.1 | 0.0 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 1e-74 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | B9HBX6 | 1e-179 | B9HBX6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s22580.1 | 1e-180 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 4e-77 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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